Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq347318 141 1e-27 seq42902 109 9e-18 seq298802 105 1e-16 seq254643 100 4e-15 seq303592 96.9 5e-14 seq380336 91.5 2e-12 seq6450 87.8 3e-11 >seq347318 Length=1073 Score = 141 bits (156), Expect = 1e-27 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||| |||||||| || |||| ||| |||| |||||||||||||||||||| ||||| Sbjct 1058 CTGGTCAACATAGCGGGCGGTGTTGTTGTAGACTCGGAGCATGGGCACAAGGCCATTGGA 999 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 || |||||||| || | ||| | ||| ||||| || | || | | ||| Sbjct 998 TATTCCATTGGTGCCAGCAATGTATGTGCCAGAGGCACGGATGCAATGGACATTGACGCC 939 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||||| || || | |||||||||||| ||||||| ||||| || |||||||||||||| Sbjct 938 AATGCCACCTGCAGACTTGGAGATGAGGGCGCACTGCTTCAGAGTGTCGTAGATGCCCTC 879 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCA 2073752 || ||| |||||||| | ||| ||||| Sbjct 878 AATGCTGTCATCCTTCATGGTTAGCAGGAAGCA 846 >seq42902 Length=231 Score = 109 bits (120), Expect = 9e-18 Identities = 93/115 (81%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| |||||| || ||| | | Sbjct 119 TGTACTTGGTGACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCCAACTCTCCGGGAA 60 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT 1485584 || || || ||||||||||||||||| | || ||| ||| ||||||||| Sbjct 59 GGAGGAGACGGACGGCGGTCTGGATCTCCCTGGACGTGATGGTGGAGCGCTTGTT 5 >seq298802 Length=733 Score = 105 bits (116), Expect = 1e-16 Identities = 142/190 (75%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 2069564 TCCACAGGCCGCGCGCCATCATGCGCTC-GACCAGGTGGCGGTTGACCACGGTAAAGTCG 2069622 |||||||||| || | ||| | ||| || |||||| ||||||| || || || Sbjct 350 TCCACAGGCCTTGCTCAGTCAGGT-CTCTGAGCAGGTGATGGTTGACAACTTGGAATTCT 408 Query 2069623 CCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTG-ATGACCTCGCACGC-CTCGGTGT 2069680 || |||||||| ||||| |||||||||||| ||| ||| ||| | || |||| ||| Sbjct 409 CCAGAGAGCACACGGCGGGTGTAGATGTTGGAGGTGTATG-GCTC-AATGCTCTCGTTGT 466 Query 2069681 TGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAGCGAGTTGCGCA 2069740 |||| |||||||| | || | ||| || |||||| | ||||| ||||| |||||||| | Sbjct 467 TGCCGAGGATCTGAGCAGTGGAGGCGGTTGGCATGGGAGCCACCAGCAGGGAGTTGCGGA 526 Query 2069741 GGCCGTACTG 2069750 ||||| ||| Sbjct 527 CGCCGTGCTG 536 >seq254643 Length=570 Score = 100 bits (110), Expect = 4e-15 Identities = 149/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 118722 GTGAGCGCCTCCTGCACCTGGAAGCGGTCCGA-GAGCATGTCGACGATGCGCGGGATCTT 118780 ||||| |||||||||||| | || | | | || || ||||||||||| | | ||| Sbjct 314 GTGAGACGCTCCTGCACCTGTA-GCCGCCGGCTGAAAATCTCGACGATGCGAGCCAACTT 256 Query 118781 GCTCAGGCCGATGATCCTGCCCGCGGGCAGGTAGCCCACGTGCGCCTTGCCGATAAAGGG 118840 ||| ||||||| ||| | | |||||| ||||| | | | | |||||| ||||| Sbjct 255 GCTGAGGCCGAGGATTTTCTTCTTGGGCAGATAGCCGATGGACACTTTGCCGTAGAAGGG 196 Query 118841 CAGCAGATGGTGCTCGCACATGGAGAAAAAGTCAATGTCGCGCACGGTCACCATCTCGCC 118900 || ||| |||||||||||||||||||| | || ||||| ||| |||||||||| Sbjct 195 CACCAGGTGGTGCTCGCACATGGAGAACATCTCGATGTCTTTCACCACCACCATCTCG-T 137 Query 118901 CGACGT-CTCGGCAAAGAGGGCGTCG 118925 || || |||| | || | ||||||| Sbjct 136 CGTGGTCCTCGTCGAACACGGCGTCG 111 >seq303592 Length=754 Score = 96.9 bits (106), Expect = 5e-14 Identities = 140/190 (74%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 2069564 TCCACAGGCCGCGCGCCATCATGCGCTC-GACCAGGTGGCGGTTGACCACGGTAAAGTCG 2069622 |||||||||| || | ||| | ||| || |||||| ||||||| || || || Sbjct 392 TCCACAGGCCCTGCTCGGTCAGGT-CTCTGAGCAGGTGATGGTTGACAACTTGGAATTCT 334 Query 2069623 CCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTG-ATGACCTCGCACGC-CTCGGTGT 2069680 || || ||||| ||||| |||||||||||| ||| ||| ||| | || |||| ||| Sbjct 333 CCAGAAAGCACACGGCGGGTGTAGATGTTGGAGGTGTATG-GCTC-AATGCTCTCGTTGT 276 Query 2069681 TGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAGCGAGTTGCGCA 2069740 |||| |||||||| | || | ||| || |||||| | || || ||||| |||||||| | Sbjct 275 TGCCGAGGATCTGAGCAGTGGAGGCAGTTGGCATGGGAGCAACCAGCAGGGAGTTGCGGA 216 Query 2069741 GGCCGTACTG 2069750 ||||| ||| Sbjct 215 CGCCGTGCTG 206 >seq380336 Length=3731 Score = 91.5 bits (100), Expect = 2e-12 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 || || |||||| | ||||| || ||| || ||| || |||||||| || |||||| Sbjct 1965 GCTGCTAACTACTTGGACATTAAAGGCCTTCTTGATGTGACTTGCAAGACTGTCGCCAAC 1906 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 | |||||||||||| | || ||||| ||||| ||||| || ||||||||| ||| Sbjct 1905 ATGATCAAGGGCAAGACCCCAGAGGAGATCCGTAAGACTTTCAACATCAAGAACG 1851 >seq6450 Length=203 Score = 87.8 bits (96), Expect = 3e-11 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 794584 GGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATG 794643 || |||| || ||| |||| |||||||| ||| |||| |||||||||||||||||| Sbjct 181 GGTTCCTGGATGTAAGTGTTAATGAGGAGACTGTACATCTCAGAGTGGATGTTTTCGATG 122 Query 794644 GCGATCTGGAAGCCATAAAAGCA 794666 ||||||||||||||||| || || Sbjct 121 GCGATCTGGAAGCCATAGAAACA 99 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7875625678263735