Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq315868 140 2e-28 seq381734 107 1e-18 seq168520 107 1e-18 seq159778 104 2e-17 seq75430 98.7 6e-16 seq42666 91.5 1e-13 seq5983 86.0 4e-12 seq104930 84.2 1e-11 >seq315868 Length=823 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 |||||||||||||| || |||||||| | || ||||||||||||||||||||| || Sbjct 286 CCTCCCCTCAACCTGAGCACCAGGTGGAGTGTCGACTCCTTCTGAATGTTATAGTCTGAG 345 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| | || || || |||||||| || ||||| || || ||||| || | || Sbjct 346 AGAGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGGAGGG 405 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || || || | | || | || || ||| || Sbjct 406 ATTCCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATTGTGTCTGAGGGCTCAACT 465 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || ||||||||||| |||||||| || |||||||| ||||| Sbjct 466 TCAAGTGTGATGGTCTTTCCTGTGAGGGTTTTGACAAAGATTTGCAT 512 Score = 118 bits (130), Expect = 7e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| |||| ||||||||||||||| ||||| || || | || |||| Sbjct 529 AGCACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCT 588 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| || ||||| ||||| || ||||| || | || | ||||||||||| Sbjct 589 TCCAACTGCTTGCCAGCGAAAATCAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCC 648 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||| | | || | ||| | |||||| || | || || ||| Sbjct 649 TGAATCTTAGCCTTGACATTTTCAATGGTGTCAGAAGGCTCGACCTCCAAAGTGATAGTC 708 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || || ||||| || |||||||||||| Sbjct 709 TTTCCAGTCAGAGTCTTAACGAAGATCTGCATG 741 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| || | || | |||||||| ||| | |||| |||||||| ||||| ||||||| Sbjct 56 TTCCACCGCGCAGACGCAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCCG 115 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | ||| | || | || || || ||||| || || ||||||| || ||||| || | | Sbjct 116 AAAGGGTACGGCCGTCCTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGATCGGGAG 175 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || |||||||| | ||||| ||| ||| | || | || || ||||| Sbjct 176 GGATACCTTCCTTGTCCTGAATTTTGGCTTTCACGTTCTCAATTGTGTCCGAGGGCTCGA 235 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| ||||| || || || || ||||| || ||||||||||| Sbjct 236 CCTCCAGGGTGATGGTTTTGCCAGTCAGAGTCTTAACGAAGATCTGCAT 284 >seq381734 Length=9470 Score = 107 bits (118), Expect = 1e-18 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| || || ||||| || ||| |||| |||| ||||| ||||| || ||||||| Sbjct 43 CCTTCTGGATATTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGA 102 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| || |||||||| | || | || |||||||| | ||||| ||||| || Sbjct 103 TCAATCTCTGCTGGTCAGGAGGAATACCTTCCTTGTCTTGAATTTTCGCCTTGAC--ATT 160 Query 34908 CT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 || || | ||| | ||| || |||| ||| |||||||| || || || || || || Sbjct 161 CTCGATTGTGTCAGATGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGTGTTTTCAC 220 Query 34966 AAAGATCTGCATGATAGTGGACTAG 34990 ||||||||||| | | || |||| Sbjct 221 GAAGATCTGCATTCTGGAGGCCTAG 245 >seq168520 Length=216 Score = 107 bits (118), Expect = 1e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 ||||||||||| || || || || |||| |||| || || ||||| |||||||| || Sbjct 9 TTCTGAATGTTGTAATCGGAGAGAGTGCGTCCATCCTCTAGCTGCTTGCCGGCGAAAATA 68 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909 || || ||||| || | || | || |||||||| | || || || || | | Sbjct 69 AGGCGCTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTTACATTTTCG 128 Query 34910 ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAG 34969 |||| || | |||||| |||| || |||||||| ||||||||||| ||||| ||| Sbjct 129 ATCGTGTCTGAAGGCTCGACCTCAAGTGTGATGGTCTTCCCCGTGAGGGTTTTTACGAAG 188 Query 34970 ATCTGCATG 34978 ||||||||| Sbjct 189 ATCTGCATG 197 >seq159778 Length=363 Score = 104 bits (114), Expect = 2e-17 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 34739 ATCCAATCATTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATG 34798 ||| | | ||| || || | || | ||||||||| || | ||| ||| || || ||| Sbjct 32 ATCAATTAATTGCCACCACGCAGACGCAGGACCAGATGGAGAGTGGACTCTTTTTGGATG 91 Query 34799 TTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGC 34858 |||||||| || || | || |||| || | ||||| || || ||||| || || ||| Sbjct 92 TTATAGTCAGACAGAGTACGACCATCCTCTAACTGCTTGCCAGCAAAGATGAGACGCTGC 151 Query 34859 TGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCA 34918 ||||| | || | || |||||||| | || || || ||| | || | ||| Sbjct 152 TGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCA 211 Query 34919 TTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || |||||| || | || |||||||| || ||||||||||| || || ||||||||| Sbjct 212 GAGGGCTCGACCTCCAATGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAAATCTGCATG 271 >seq75430 Length=261 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| ||||| ||||| || || || ||| |||| |||| || || ||||| || || || Sbjct 197 CTCTTTCTGGATGTTGTAATCAGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCTGCAAA 138 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 || || || |||||||| | || | ||||||||||| | || || |||||| Sbjct 137 AATAAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTT 78 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | || || ||| || || | || ||||||||||| || |||||||| || Sbjct 77 CTCGATGGTATCTGAGGGCTCAACCTCCAAAGTGATGGTCTTTCCAGTAAGGGTCTTAAC 18 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 17 GAAGATCTGCAT 6 >seq42666 Length=224 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||||||| || |||| || | ||| |||||||||||| || ||||| ||| Sbjct 99 CCACCCCTCAACCTGAGAACCAAATGGAGGGTTGACTCCTTCTGAATATTGTAGTCGGAT 158 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 ||| | || |||| ||||| ||||| || || ||||||| || |||||||| Sbjct 159 AGGGTACGTCCATCTTCCAGCTGCTTGCCCGCAAAGATCAAGCGCTGCTGGTC 211 >seq5983 Length=204 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 34839 CGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTT 34898 |||| ||||| || || |||||||| | || | ||||||||||| | ||||| | Sbjct 204 CGGCAAAGATTAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATTTTAGCCT 145 Query 34899 TGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGG 34958 | ||| | || | || || |||||| || | ||| ||||||||||| || || | Sbjct 144 TCACGTTCTCGATGGTGTCTGAGGGCTCGACCTCCAAGGTGATGGTCTTTCCAGTCAGAG 85 Query 34959 TCTTTACAAAGATCTGCATG 34978 |||||||||||||||||||| Sbjct 84 TCTTTACAAAGATCTGCATG 65 >seq104930 Length=294 Score = 84.2 bits (92), Expect = 1e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 34839 CGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTT 34898 |||| ||||| || || |||||||| | || | ||||||||||| | ||||| | Sbjct 1 CGGCAAAGATTAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATTTTAGCCT 60 Query 34899 TGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGG 34958 ||||| | || | || || ||| || || | ||| ||||||||||| || |||| Sbjct 61 TGACGTTCTCGATGGTGTCTGAGGGCTCAACCTCCAAGGTGATGGTCTTTCCAGTCAGGG 120 Query 34959 TCTTTACAAAGATCTGCAT 34977 |||| |||||||||||||| Sbjct 121 TCTTCACAAAGATCTGCAT 139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324177032324435