Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq315868 147 4e-30 seq159778 143 5e-29 seq168520 109 1e-18 seq104930 89.7 1e-12 seq5983 86.0 1e-11 >seq315868 Length=823 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| ||||| | || || | ||| || || || || ||||| || ||||| || | Sbjct 284 TACCTCCCCTCAACCTGAGCACCAGGTGGAGTGTCGACTCCTTCTGAATGTTATAGTCTG 343 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | ||||| || || || |||||||||||||| || | || ||||| |||| Sbjct 344 AGAGAGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGGAG 403 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| ||||| ||||| ||||| || || ||||||||||| || || || || | Sbjct 404 GGATTCCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATTGTGTCTGAGGGCTCAA 463 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | || || ||||| ||||| | || || ||||| || ||||| Sbjct 464 CTTCAAGTGTGATGGTCTTTCCTGTGAGGGTTTTGACAAAGATTTGCAT 512 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| || || ||||| || || || || ||||| || || || || | Sbjct 512 TACCACCACGCAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGG 571 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | ||| ||||| | || || ||||| || || || | || ||||| |||| Sbjct 572 ACAGAGTACGACCATCTTCCAACTGCTTGCCAGCGAAAATCAGACGCTGCTGATCGGGAG 631 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || |||||||| || || ||||||||||| || ||| ||| || | Sbjct 632 GGATGCCCTCCTTGTCCTGAATCTTAGCCTTGACATTTTCAATGGTGTCAGAAGGCTCGA 691 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||||||| || ||||| || |||| ||||| || || |||||||| Sbjct 692 CCTCCAAAGTGATAGTCTTTCCAGTCAGAGTCTTAACGAAGATCTGCAT 740 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || ||||| || || ||||| ||||| || || || || || Sbjct 58 CCACCGCGCAGACGCAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAA 117 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || || || || ||||||||||| | | || ||||| ||||| Sbjct 118 AGGGTACGGCCGTCCTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGATCGGGAGGG 177 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || ||||| || ||||| || || ||||| || || || || || Sbjct 178 ATACCTTCCTTGTCCTGAATTTTGGCTTTCACGTTCTCAATTGTGTCCGAGGGCTCGACC 237 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || || ||||| |||| ||||| || || |||||||| Sbjct 238 TCCAGGGTGATGGTTTTGCCAGTCAGAGTCTTAACGAAGATCTGCAT 284 >seq159778 Length=363 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || | || ||||| || ||||| || || ||||| ||||| Sbjct 44 CCACCACGCAGACGCAGGACCAGATGGAGAGTGGACTCTTTTTGGATGTTATAGTCAGAC 103 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | ||| || |||| || || ||||||||||| || | || || || ||||| Sbjct 104 AGAGTACGACCATCCTCTAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCGGGAGGA 163 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| || || || || ||||| || ||| || || || Sbjct 164 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCAGAGGGCTCGACC 223 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || ||||||||||| | ||||| || || |||||||| Sbjct 224 TCCAATGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAAATCTGCAT 270 >seq168520 Length=216 Score = 109 bits (120), Expect = 1e-18 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680 ||||||| || || ||||| || ||| | | || || ||||| || || || || || | Sbjct 7 CTTTCTGAATGTTGTAATCGGAGAGAGTGCGTCCATCCTCTAGCTGCTTGCCGGCGAAAA 66 Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740 | || | || ||||| || || || |||||||| || || ||||| || |||||||||| Sbjct 67 TAAGGCGCTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTTACATTTT 126 Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800 | ||||| || ||| || || || | || || ||||| || || | || ||||| | Sbjct 127 CGATCGTGTCTGAAGGCTCGACCTCAAGTGTGATGGTCTTCCCCGTGAGGGTTTTTACGA 186 Query 82801 ATATCTGCAT 82810 | |||||||| Sbjct 187 AGATCTGCAT 196 >seq104930 Length=294 Score = 89.7 bits (98), Expect = 1e-12 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || ||||| || || ||||| ||||| || || || || || Sbjct 141 CCACCGCGCAGACGCAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAA 200 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || || || || ||||||||||| | | || ||||| ||||| Sbjct 201 AGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGATCGGGAGGG 260 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTAC 82735 || |||||||| || || ||||| || || || Sbjct 261 ATACCTTCCTTGTCCTGGATCTTAGCCTTAAC 292 >seq5983 Length=204 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733 ||||||||||| | || || || || || ||||| ||||| || || || || || || Sbjct 202 GCAAAGATTAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATTTTAGCCTTC 143 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 || || || || || || || || || ||||| || || ||||| || |||| ||| Sbjct 142 ACGTTCTCGATGGTGTCTGAGGGCTCGACCTCCAAGGTGATGGTCTTTCCAGTCAGAGTC 83 Query 82794 TTTACAAATATCTGCAT 82810 |||||||| |||||||| Sbjct 82 TTTACAAAGATCTGCAT 66 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 977023467752235