Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq41980 149 6e-31 seq41981 143 3e-29 seq159778 136 4e-27 seq315868 131 2e-25 seq168520 127 2e-24 seq75430 123 2e-23 seq381734 122 8e-23 seq5983 91.5 1e-13 seq104930 84.2 2e-11 >seq41980 Length=230 Score = 149 bits (164), Expect = 6e-31 Identities = 152/196 (78%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 133466 GGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCG 133524 ||| || ||||| || ||||| ||| || ||| | | | || || ||||||||||| | Sbjct 230 GGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGCCGG 172 Query 133525 CGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGA 133584 || ||||||| |||||||||||||||||||||||||||||||| |||||| ||| | Sbjct 171 CGAAAATGAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTAA 112 Query 133585 GCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTT 133644 | ||||| ||||||| |||||| || || | |||| ||| ||||| |||| ||| | Sbjct 111 CGTTCTCAATAGTGTCGGAGGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAAAGTCT 52 Query 133645 TTACGAAAATCTGCAT 133660 | || ||||| ||||| Sbjct 51 TCACAAAAATTTGCAT 36 >seq41981 Length=230 Score = 143 bits (158), Expect = 3e-29 Identities = 151/196 (77%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 133466 GGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCG 133524 ||| || ||||| || ||||| ||| || ||| | | | || || ||||||||||| | Sbjct 230 GGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGCCGG 172 Query 133525 CGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGA 133584 | ||||||| |||||||||||||||||||||||||| ||||| |||||| ||| | Sbjct 171 CAAAAATGAGACGCTGCTGGTCGGGAGGGATGCCTTCTTTGTCCTGGATCTTAGCCTTAA 112 Query 133585 GCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTT 133644 | ||||| ||||||| |||||| || || | |||| ||| |||||||||| ||| | Sbjct 111 CATTCTCAATAGTGTCGGAGGGCTCAACCTCCAAAGTGATGGTCTTGCCGGTCAAAGTCT 52 Query 133645 TTACGAAAATCTGCAT 133660 | || ||||| ||||| Sbjct 51 TCACAAAAATTTGCAT 36 >seq159778 Length=363 Score = 136 bits (150), Expect = 4e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||||| || || || || || || || ||| | ||||| | ||||||||| Sbjct 74 GTGGACTCTTTTTGGATGTTATAGTCAGACAGAGTACGACCA-TCCTCTAACTGCTTGCC 132 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| ||||||||||||||||| |||||||||||||| |||||| ||| Sbjct 133 AGCAAAGATGAGACGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 192 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| | |||||| || || | |||| ||| ||||| || || || Sbjct 193 CACGTTCTCAATGGTGTCAGAGGGCTCGACCTCCAATGTGATGGTCTTGCCTGTGAGGGT 252 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||||||||||||| Sbjct 253 CTTGACGAAAATCTGCATG 271 >seq315868 Length=823 Score = 131 bits (144), Expect = 2e-25 Identities = 157/209 (75%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 || || | |||||| || ||||| || ||||| || | | | | ||| |||||| | Sbjct 79 AAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTC--CGAAAGGGTACGGCCGTCCTCAA 136 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 ||||||| || || | || | |||||||| ||||||||||| ||||||||||| ||| Sbjct 137 GCTGCTTACCAGCAAAGATCAAGCGCTGCTGATCGGGAGGGATACCTTCCTTGTC-CTGA 195 Query 133573 TCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 ||| || || | | ||||| ||||| | |||||| || || | ||||| ||||||| Sbjct 196 ATTTTGGCTTTCACGTTCTCAATTGTGTCCGAGGGCTCGACCTCCAGGGTGATGGTTTTG 255 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || |||||||| || ||||| |||||||| Sbjct 256 CCAGTCAGAGTCTTAACGAAGATCTGCAT 284 Score = 131 bits (144), Expect = 2e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||| ||||| || ||||| ||| || || ||| | || || | Sbjct 535 AAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCA-TCTTCCAA 593 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| |||| || |||||||| |||||||||||||| |||||||| || Sbjct 594 CTGCTTGCCAGCGAAAATCAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGAAT 653 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | |||| ||||| | ||||| || || | |||| || || || Sbjct 654 CTTAGCCTTGACATTTTCAATGGTGTCAGAAGGCTCGACCTCCAAAGTGATAGTCTTTCC 713 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 |||||||| || ||||| ||||||||| || Sbjct 714 AGTCAGAGTCTTAACGAAGATCTGCATGCCT 744 Score = 102 bits (112), Expect = 8e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||| |||||||| || || | ||||| |||||||| ||||||||||| || ||||| Sbjct 357 GTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGGAGGGATTCCCTCCTT 416 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||| | | |||| ||||| | |||||| || || | |||| Sbjct 417 GTCTTGGATCTTGGCCTTAACATTTTCAATTGTGTCTGAGGGCTCAACTTCAAGTGTGAT 476 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || || ||||| || || || ||||| Sbjct 477 GGTCTTTCCTGTGAGGGTTTTGACAAAGATTTGCAT 512 >seq168520 Length=216 Score = 127 bits (140), Expect = 2e-24 Identities = 145/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 133471 CTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAA 133529 ||||||| || ||||||||| | ||| | | | ||||| ||||||||||| ||| || Sbjct 7 CTTTCTGAATGTTGTAATCGGAGAGAGTGCGTCCA-TCCTCTAGCTGCTTGCCGGCGAAA 65 Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 || || |||||||| || || ||||||||||||||||| |||||| ||| | | Sbjct 66 ATAAGGCGCTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTTACATTT 125 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 || | |||||| | ||||| || || | |||| ||| || || || || ||||||||| Sbjct 126 TCGATCGTGTCTGAAGGCTCGACCTCAAGTGTGATGGTCTTCCCCGTGAGGGTTTTTACG 185 Query 133650 AAAATCTGCATG 133661 || ||||||||| Sbjct 186 AAGATCTGCATG 197 >seq75430 Length=261 Score = 123 bits (136), Expect = 2e-23 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||||||||| || |||||||| || ||| | | | ||||| |||| Sbjct 209 ATGGAGGGTTGACTCTTTCTGGATGTTGTAATCAGACAGGGTGCGGCCA-TCCTCAAGCT 151 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || |||| || ||||||||||| || ||||| || |||||||| ||||| Sbjct 150 GCTTGCCTGCAAAAATAAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCT 91 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||| | || || | |||||| || || | |||| ||| || || | Sbjct 90 TAGCCTTGACGTTCTCGATGGTATCTGAGGGCTCAACCTCCAAAGTGATGGTCTTTCCAG 31 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || ||||| |||||||| Sbjct 30 TAAGGGTCTTAACGAAGATCTGCAT 6 >seq381734 Length=9470 Score = 122 bits (134), Expect = 8e-23 Identities = 144/190 (76%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 133473 TTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAAAT 133531 ||||| |||||||| || || ||| ||| | || || ||||||||||| ||| | || Sbjct 45 TTCTGGATATTGTAGTCAGACAGGGTGCGACCA-TCTTCCAGCTGCTTGCCAGCGAAGAT 103 Query 133532 GAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CTTGAGCTGCT 133590 | | ||||||||| ||||| || ||||||||||| ||| ||| | ||||| | || Sbjct 104 CAATCTCTGCTGGTCAGGAGGAATACCTTCCTTGTC-TTGAATTTTCGCCTTGACATTCT 162 Query 133591 CAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGA 133650 | | ||||| | |||||||| || | ||||| ||| ||||| ||||| ||||| |||| Sbjct 163 CGATTGTGTCAGATGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGTGTTTTCACGA 222 Query 133651 AAATCTGCAT 133660 | |||||||| Sbjct 223 AGATCTGCAT 232 >seq5983 Length=204 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 || || ||||||||||| || ||||| || |||||||| ||| || ||| | | | Sbjct 196 ATTAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATTTTAGCCTTCACGTTC 137 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 || | ||||| | |||||| || || | ||||| ||| || || |||||||| ||||| Sbjct 136 TCGATGGTGTCTGAGGGCTCGACCTCCAAGGTGATGGTCTTTCCAGTCAGAGTCTTTACA 77 Query 133650 AAAATCTGCATGGCT 133664 || ||||||||| || Sbjct 76 AAGATCTGCATGCCT 62 >seq104930 Length=294 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 || || ||||||||||| || ||||| || |||||||| ||| || ||||| | | Sbjct 9 ATTAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATTTTAGCCTTGACGTTC 68 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 || | ||||| | |||||| || || | ||||| ||| || || ||||| || || || Sbjct 69 TCGATGGTGTCTGAGGGCTCAACCTCCAAGGTGATGGTCTTTCCAGTCAGGGTCTTCACA 128 Query 133650 AAAATCTGCAT 133660 || |||||||| Sbjct 129 AAGATCTGCAT 139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481113281452600