Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq315868 102 2e-16 seq168520 86.0 1e-11 seq75430 86.0 1e-11 >seq315868 Length=823 Score = 102 bits (112), Expect = 2e-16 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || ||||| || ||||||||||| || || ||||||||| | ||| Sbjct 725 AAGACTCTGACTGGAAAGACTATCACTTTGGAGGTCGAGCCTTCTGACACCATTGAAAAT 666 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||| || || || || || || || || | || || ||| Sbjct 665 GTCAAGGCTAAGATTCAGGACAAGGAGGGCATCCCTCCCGATCAGCAGCGTCTGATTTTC 606 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||||||||||||||| | ||| || |||| |||||| | ||||| ||||| Sbjct 605 GCTGGCAAGCAGTTGGAAGATGGTCGTACTCTGTCCGACTACAACATTCAGAAGGAGTCC 546 Query 206365 ACTCTTCAC 206373 || |||||| Sbjct 545 ACCCTTCAC 537 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| |||||| ||||||||||| || ||||| | ||||| || || ||| Sbjct 509 CAAATCTTTGTCAAAACCCTCACAGGAAAGACCATCACACTTGAAGTTGAGCCCTCAGAC 450 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | ||| || ||| ||||| ||||| || || ||||| || || || Sbjct 449 ACAATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCCGATCAGCAG 390 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || ||||||||| | || || || | ||| | | || || ||| | Sbjct 389 CGTCTCATCTTTGCTGGAAAGCAGCTTGAGGACGGCCGCACTCTCTCAGACTATAACATT 330 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || ||||| || Sbjct 329 CAGAAGGAGTCGACACTCCACCTGGT 304 >seq168520 Length=216 Score = 86.0 bits (94), Expect = 1e-11 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || ||||| | || || || ||| ||||| ||||| Sbjct 181 AAAACCCTCACGGGGAAGACCATCACACTTGAGGTCGAGCCTTCAGACACGATCGAAAAT 122 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||| || || || || | ||||| ||| Sbjct 121 GTAAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGATCAGCAGCGCCTTATTTTC 62 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAG 206359 ||||| |||||| | || |||||| | ||| | ||||||||||| | ||||||| Sbjct 61 GCCGGCAAGCAGCTAGAGGATGGACGCACTCTCTCCGATTACAACATTCAGAAAG 7 >seq75430 Length=261 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || ||||| || ||||||||||| || || || || || |||| Sbjct 21 AAGACCCTTACTGGAAAGACCATCACTTTGGAGGTTGAGCCCTCAGATACCATCGAGAAC 80 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || ||||| || ||| || | ||||| || Sbjct 81 GTCAAGGCTAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCAGCAGCGTCTTATTTTT 140 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| | || ||||| | || || | ||||||||| ||||||||||||| Sbjct 141 GCAGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCTGATTACAACATCCAGAAAGAGTCA 200 Query 206365 ACTCTTCACCTTGTT 206379 || || || |||||| Sbjct 201 ACCCTCCATCTTGTT 215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176038570002665