Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq347318 118 2e-20 seq298802 102 1e-15 seq254643 102 1e-15 seq303592 93.3 6e-13 seq6449 86.0 9e-11 >seq347318 Length=1073 Score = 118 bits (130), Expect = 2e-20 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 259970 TGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAG 260029 ||||| ||| | |||||||| || || ||||||||||| ||||| || |||||| Sbjct 846 TGCTTCCTGCTAACCATGAAGGATGACAGCATTGAGGGCATCTACGACACTCTGAAGCAG 905 Query 260030 TGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCC 260089 ||||| |||||||||||| | || || ||||| || | | || | || ||| Sbjct 906 TGCGCCCTCATCTCCAAGTCTGCAGGTGGCATTGGCGTCAATGTCCATTGCATCCGTGCC 965 Query 260090 GCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGC 260149 | ||| | ||| | || |||||||| || ||||| ||||||||||||||||| || Sbjct 966 TCTGGCACATACATTGCTGGCACCAATGGAATATCCAATGGCCTTGTGCCCATGCTCCGA 1025 Query 260150 GTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 || | ||| |||| || ||||| || |||||| Sbjct 1026 GTCTACAACAACACCGCCCGCTATGTTGACCAG 1058 >seq298802 Length=733 Score = 102 bits (112), Expect = 1e-15 Identities = 123/162 (76%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 262912 CAGCATGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAG 262971 ||||| ||| | |||||||| |||| ||||| | |||||| || ||| | || | ||| Sbjct 536 CAGCACGGCGTCCGCAACTCCCTGCTGGTGGCTCCCATGCCAACCGCCTCCACTGCTCAG 477 Query 262972 ATCCTGGGCAACACCGAG-GCGTTCGAGGTCAT-CACGAGCAACATCTACACGCGCCGCG 263029 ||||| ||||||| |||| || || ||| ||| ||| |||||||||||| ||||| | Sbjct 476 ATCCTCGGCAACAACGAGAGCATT-GAGC-CATACACCTCCAACATCTACACCCGCCGTG 419 Query 263030 TGCTCTCGGGCGACTTTACCGTGGTCAACCGCCACCTGGTCA 263071 ||||||| || || || || ||||||| |||||| ||| Sbjct 418 TGCTCTCTGGAGAATTCCAAGTTGTCAACCATCACCTGCTCA 377 >seq254643 Length=570 Score = 102 bits (112), Expect = 1e-15 Identities = 189/272 (69%), Gaps = 4/272 (1%) Strand=Plus/Plus Query 2133533 CGGCGCCCTCTTTGACGAGGCGTCGGACGAGATGGTGACGGTGCGCGATATTGACTTTTT 2133592 || |||| | || ||||||| |||||||||||| |||| || || || | || Sbjct 111 CGACGCCGTGTTCGACGAGGACCACGACGAGATGGTGGTGGTGAAAGACATCGAGATGTT 170 Query 2133593 CTCCATGTGCGAGCACCACCTGCTGCCCTTTATCGGCAAGGCCCACGTGGGCTACCTGCC 2133652 |||||||||||||||||||||| ||||||| |||||| | | | ||||| ||||| Sbjct 171 CTCCATGTGCGAGCACCACCTGGTGCCCTTCTACGGCAAAGTGTCCATCGGCTATCTGCC 230 Query 2133653 CGCGGGCAAGATCATCGGTCTGAGCAAGATCCCGCGCATCGTCGACATGTT-TTCCGACC 2133711 | | || ||| |||| || |||||| | | ||||||||||| || || ||| | Sbjct 231 CAAGAAGAAAATCCTCGGCCTCAGCAAGTTGGCTCGCATCGTCGAGATTTTCAGCCGGCG 290 Query 2133712 GCTTCCAAGTACAGGAGGCACTCACGCGCCAGATCGCCGAGAGC-GTGAGCCAGGTTACG 2133770 || | || || |||||| ||||| ||||| | ||| || || | | ||| | Sbjct 291 GC-TACAGGTGCAGGAGCGTCTCACCAAGCAGATTG-CGATTGCGGTCACCAAGGCGGTG 348 Query 2133771 GGCGCGCGCGGCGTCGGCGTCGTCCTCGAGGG 2133802 | | | ||| |||| ||||||| |||| || Sbjct 349 GACCCCGCCGGTGTCGCCGTCGTCGTCGAAGG 380 >seq303592 Length=754 Score = 93.3 bits (102), Expect = 6e-13 Identities = 121/162 (75%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 262912 CAGCATGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAG 262971 ||||| ||| | |||||||| |||| || || | |||||| || ||| | || | ||| Sbjct 206 CAGCACGGCGTCCGCAACTCCCTGCTGGTTGCTCCCATGCCAACTGCCTCCACTGCTCAG 265 Query 262972 ATCCTGGGCAACACCGAG-GCGTTCGAGGTCAT-CACGAGCAACATCTACACGCGCCGCG 263029 ||||| ||||||| |||| || || ||| ||| ||| |||||||||||| ||||| | Sbjct 266 ATCCTCGGCAACAACGAGAGCATT-GAGC-CATACACCTCCAACATCTACACCCGCCGTG 323 Query 263030 TGCTCTCGGGCGACTTTACCGTGGTCAACCGCCACCTGGTCA 263071 |||| || || || || || ||||||| |||||| ||| Sbjct 324 TGCTTTCTGGAGAATTCCAAGTTGTCAACCATCACCTGCTCA 365 >seq6449 Length=203 Score = 86.0 bits (94), Expect = 9e-11 Identities = 126/177 (71%), Gaps = 1/177 (1%) Strand=Plus/Plus Query 1455894 CACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCG 1455953 ||||| || ||||| ||| |||||| ||||| || ||| ||||| |||| | | Sbjct 6 CACGTGCTTGCCTTCTTT-GCCGCCTCTGATGGAATTGTGAATGAGAATCTGGTTGAGAG 64 Query 1455954 CTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCAT 1456013 || | | || || ||| | | || || | | || || || |||||||||||||| Sbjct 65 ATTCAGCCAGGAAGTGCAAGTCACCGAAGCCAGGTGTTTCTATGGCTTCCAGATCGCCAT 124 Query 1456014 CGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 |||||||||||||||||||| ||| ||||| || |||| ||| || |||| || Sbjct 125 CGAAAACATCCACTCTGAAATGTACAGTCTCCTCATTAACACTTACATCCAGGAACC 181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7140979618882130