Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq347318 114 2e-20 seq6450 100 4e-16 seq6449 100 4e-16 seq298802 87.8 2e-12 >seq347318 Length=1073 Score = 114 bits (126), Expect = 2e-20 Identities = 288/433 (67%), Gaps = 10/433 (2%) Strand=Plus/Minus Query 69745 TTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATA 69804 || ||||| ||||| || | || | ||| ||||| || ||||||| ||||| || | | Sbjct 1069 TTGTTTCCACCCTGGTCAACATAGCGGGCGGTGTTGTTGTAGACTCGGAGCATGGGCACA 1010 Query 69805 ATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTA 69864 | ||||| ||| | ||||| || |||| ||| || | || || || || | Sbjct 1009 AGGCCATTGGATATTCCATTGGTGCCAGCAATGTATGTGCCAGAGGCACGGATGC----A 954 Query 69865 ATAGATA--GAC--CTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGT 69920 || || | ||| | || || ||||| || ||||| || || || | |||| || Sbjct 953 ATGGACATTGACGCCAATGCCACCTGCAGACTTGGAGATGAGGGCGCACTGCTTCAGAGT 894 Query 69921 GTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTG 69980 ||| || || ||||| ||||| ||||| ||||| | || || || || || || | ||| Sbjct 893 GTCGTAGATGCCCTCAATGCTGTCATCCTTCATGGTTAGCAGGAAGCAACTTGAGAGTTG 834 Query 69981 ATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGA 70040 | | | | || | || || || | || || || || |||||||| | ||| || Sbjct 833 AGGTTTGACGGTGGCAGCGTTGAACAGGGTGGGGGAGGCATGAGTGAAATAGCGTTCCGA 774 Query 70041 AAGCAGATTGTATGTTTCAATAGCTGATTCTATATCC-CACTGATGAATTCCTATCGCGA 70099 ||||||||||| || || | | || || ||| ||| ||| || || | || | Sbjct 773 CAGCAGATTGTAGGTGATGATGGTGGCATCAATGTCCTCAC-CATGGATACCAACAGCAA 715 Query 70100 CACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATG 70159 | | ||||| ||| ||||| || || || || |||||| | || || || ||||| Sbjct 714 CTCTCATCAGCATGTGCTGCGGGCGCTCGGCCACTTTATTGTCAATGCGCAGCAAGTATG 655 Query 70160 ATTTTTCCAGAGT 70172 || ||||||||| Sbjct 654 ATCGTTCCAGAGT 642 >seq6450 Length=203 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 39902 AGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTT 39961 ||||| ||||| || || ||||||||||| || || ||||| || || || ||||| || Sbjct 154 AGACTGTACATCTCAGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAGAAACACCTG 95 Query 39962 GCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCA 40021 ||||| || | ||| || || | |||||||| ||| ||| |||||||| |||||| Sbjct 94 GCTTCGGTGACTTGCACTTCCTGGCTGAATCTTTCAACCAGATTCTCATTCACAATTCCA 35 Query 40022 TCACTAGCGGCAAAAAATGC 40041 ||| |||||||| || || Sbjct 34 TCAGAGGCGGCAAAGAAGGC 15 >seq6449 Length=203 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 39902 AGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTT 39961 ||||| |||||||| || ||||||||||| || || ||||| || || || ||||| || Sbjct 154 AGACTGTACATTTCAGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAGAAACACCTG 95 Query 39962 GCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCA 40021 ||||| || | ||| || || | ||||| || ||| ||| |||||||| |||||| Sbjct 94 GCTTCGGTGACTTGCACTTCCTGGCTGAATCTCTCAACCAGATTCTCATTCACAATTCCA 35 Query 40022 TCACTAGCGGCAAAAAATGC 40041 ||| |||||||| || || Sbjct 34 TCAGAGGCGGCAAAGAAGGC 15 >seq298802 Length=733 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 68623 TGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTC 68682 ||||||||||| || | || || || | ||||||| |||||||||||| | | Sbjct 304 TGAATGGATCCTCCGTGAGAAATGATAGTGGTCTTGATGCCATCATTCCACAGGCCTTGC 363 Query 68683 TCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTA 68742 || || | |||| || || || | || || | ||| ||||| ||||| | ||| | Sbjct 364 TCAGTCAGGTCTCTGAGCAGGTGATGGTTGACAACTTGGAATTCTCCAGAGAGCACACGG 423 Query 68743 CGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCA 68802 || ||||| || || ||| ||||| || | || || || || || || |||||| Sbjct 424 CGGGTGTAGATGTTGGAGGTGTATGGCTCAATGCTCTCGTTGTTGCCGAGGATCTGAGCA 483 Query 68803 GTTGATGCAGTTGGCATAGGTGCCACCA 68830 || || || |||||||| || ||||||| Sbjct 484 GTGGAGGCGGTTGGCATGGGAGCCACCA 511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 683629969638600