Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq41980 107 2e-18 seq41981 102 7e-17 seq315868 100 2e-16 >seq41980 Length=230 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 27054 GAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCG 27113 || || || || || ||||||||| || | |||| | ||||| ||||| || |||||| Sbjct 229 GATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCG 170 Query 27114 TAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGG 27173 ||||||||||||| || || || || | || || || || |||||| || | | Sbjct 169 AAAATGAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTAACG 110 Query 27174 GTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTC 27233 | || | |||||| | || ||||| || | ||| || | ||||| |||| ||| ||| Sbjct 109 TTCTCAATAGTGTCGGAGGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTC 50 Query 27234 ACAAAGATTTGCAT 27247 ||||| |||||||| Sbjct 49 ACAAAAATTTGCAT 36 >seq41981 Length=230 Score = 102 bits (112), Expect = 7e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 27054 GAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCG 27113 || || || || || ||||||||| || | |||| | ||||| ||||| || ||||| Sbjct 229 GATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCA 170 Query 27114 TAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGG 27173 ||||||||||||| || || || || | || ||||| || |||||| || | Sbjct 169 AAAATGAGACGCTGCTGGTCGGGAGGGATGCCTTCTTTGTCCTGGATCTTAGCCTTAACA 110 Query 27174 GTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTC 27233 | || | |||||| | || ||||| || | ||| || | ||||| |||| ||| ||| Sbjct 109 TTCTCAATAGTGTCGGAGGGCTCAACCTCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTC 50 Query 27234 ACAAAGATTTGCAT 27247 ||||| |||||||| Sbjct 49 ACAAAAATTTGCAT 36 >seq315868 Length=823 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||||| | |||| || | || || || || ||||| || ||||| Sbjct 286 CCTCCCCTCAACCTGAGCACCAGGTGGAGTGTCGACTCCTTCTGAATGTTATAGTCTGAG 345 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| |||| || ||||| || || || | ||||||||||| ||||| || || Sbjct 346 AGAGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGGAGGG 405 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||||||| || | |||| | ||||||| || |||||| Sbjct 406 ATTCCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATTGTGTCTGAGGGCTCAACT 465 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || | || || || || ||||| ||||||||||||||| Sbjct 466 TCAAGTGTGATGGTCTTTCCTGTGAGGGTTTTGACAAAGATTTGCATA 513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422956763933880