Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq315868 168 2e-36 seq159778 158 4e-33 seq75430 152 2e-31 seq381734 138 3e-27 seq168520 131 5e-25 seq380081 116 1e-20 seq104930 105 2e-17 seq5983 104 7e-17 seq323066 86.0 2e-11 >seq315868 Length=823 Score = 168 bits (186), Expect = 2e-36 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| || | || || || || || || || || ||||| || ||||| ||||| || Sbjct 282 CATACCTCCCCTCAACCTGAGCACCAGGTGGAGTGTCGACTCCTTCTGAATGTTATAGTC 341 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || ||||| || |||||||||||||| ||||| |||||||| || Sbjct 342 TGAGAGAGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGG 401 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| ||||| || || || || || || || || ||||| ||||| | || || || || Sbjct 402 AGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATTGTGTCTGAGGGCTC 461 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||||||||||| | |||||||| || || ||||| ||||| || ||||| Sbjct 462 AACTTCAAGTGTGATGGTCTTTCCTGTGAGGGTTTTGACAAAGATTTGCAT 512 Score = 145 bits (160), Expect = 2e-29 Identities = 173/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || | ||||| || ||||| || ||||| || | Sbjct 506 TTTGCATACCACCACGCAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGT 565 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || |||||||| | || || ||||| || || ||||| ||||||| Sbjct 566 AGTCGGACAGAGTACGACCATCTTCCAACTGCTTGCCAGCGAAAATCAGACGCTGCTGAT 625 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | ||||| || || || || |||||||| ||||| || ||||| ||||| | ||||| | Sbjct 626 CGGGAGGGATGCCCTCCTTGTCCTGAATCTTAGCCTTGACATTTTCAATGGTGTCAGAAG 685 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || | || | |||||||| || || || || || || |||||||| Sbjct 686 GCTCGACCTCCAAAGTGATAGTCTTTCCAGTCAGAGTCTTAACGAAGATCTGCAT 740 Score = 116 bits (128), Expect = 1e-20 Identities = 153/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 140527 GAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTT 140586 || |||| || || || || || || || || || || || || | || || || || | Sbjct 75 GACCAAG-TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCT 133 Query 140587 CAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCT 140646 |||| || || ||||||||||| | || |||||||| ||||| || ||||| || |||| Sbjct 134 CAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGATCGGGAGGGATACCTTCCTTGTCCT 193 Query 140647 GAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCT 140706 ||||||| ||||| || || ||||| | || || || || || || || || | || | Sbjct 194 GAATTTTGGCTTTCACGTTCTCAATTGTGTCCGAGGGCTCGACCTCCAGGGTGATGGTTT 253 Query 140707 TTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || || || || |||||||| Sbjct 254 TGCCAGTCAGAGTCTTAACGAAGATCTGCAT 284 >seq159778 Length=363 Score = 158 bits (174), Expect = 4e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | || || ||||| ||||| ||||||||||| || ||||| ||||| Sbjct 44 CCACCACGCAGACGCAGGACCAGATGGAGAGTGGACTCTTTTTGGATGTTATAGTCAGAC 103 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || ||||| || | || || ||||||||||| ||||| ||||| || |||||| Sbjct 104 AGAGTACGACCATCCTCTAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCGGGAGGA 163 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || ||||| || ||||| || || || || || || ||||| | ||||| || || || Sbjct 164 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCAGAGGGCTCGACC 223 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || | ||| | ||||| || || || || || || ||||||||||| Sbjct 224 TCCAATGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAAATCTGCAT 270 >seq75430 Length=261 Score = 152 bits (168), Expect = 2e-31 Identities = 173/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| ||||| || | | ||||||||||| || || |||||||| || || || ||||| Sbjct 236 CATGCCACCGCGCAGACGGAGAACAAGATGGAGGGTTGACTCTTTCTGGATGTTGTAATC 177 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || ||||| ||||| || || || ||||| || ||||| ||||| ||||| Sbjct 176 AGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCTGCAAAAATAAGACGCTGCTGGTCAGG 117 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || ||||| || || ||||| || ||||| || || || || || | ||| || || || Sbjct 116 GGGGATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTATCTGAGGGCTC 57 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 ||| || | || | |||||||| || || || || || || ||||||||| Sbjct 56 AACCTCCAAAGTGATGGTCTTTCCAGTAAGGGTCTTAACGAAGATCTGCATT 5 >seq381734 Length=9470 Score = 138 bits (152), Expect = 3e-27 Identities = 144/189 (76%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || || ||||| || ||||| | || || |||||||| || || || ||||| ||||| Sbjct 45 TTCTGGATATTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATC 104 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 | | ||||| ||||||||||| ||||| || || |||||||| || || ||||| || Sbjct 105 AATCTCTGCTGGTCAGGAGGAATACCTTCCTTGTCTTGAATTTTCGCCTTGACATTCTCG 164 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || | |||||||| || || ||||| || | ||||| || || |||||||| || || Sbjct 165 ATTGTGTCAGATGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGTGTTTTCACGAAG 224 Query 140730 ATCTGCATT 140738 ||||||||| Sbjct 225 ATCTGCATT 233 >seq168520 Length=216 Score = 131 bits (144), Expect = 5e-25 Identities = 143/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 140548 CTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGA 140607 |||| ||||| || ||||| || | || || ||||| || || || || || || || | Sbjct 7 CTTTCTGAATGTTGTAATCGGAGAGAGTGCGTCCATCCTCTAGCTGCTTGCCGGCGAAAA 66 Query 140608 TTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTAT 140667 | || || ||||||||||| || || ||||| || ||||| || || || |||||||| | Sbjct 67 TAAGGCGCTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTTACATTTT 126 Query 140668 CAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAA 140727 | |||| || || || || || |||||||| | ||||| || || || |||||||| | Sbjct 127 CGATCGTGTCTGAAGGCTCGACCTCAAGTGTGATGGTCTTCCCCGTGAGGGTTTTTACGA 186 Query 140728 AAATCTGCAT 140737 | |||||||| Sbjct 187 AGATCTGCAT 196 >seq380081 Length=3541 Score = 116 bits (128), Expect = 1e-20 Identities = 199/288 (69%), Gaps = 3/288 (1%) Strand=Plus/Minus Query 349601 GTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACA 349660 || ||| | |||||| | ||||| || ||||| || || || ||||||||| || || Sbjct 1996 GTTACTCACGCTGTTGTGACTGTGCCTGCCTACTTCAACGACGCCCAGCGTCAGGCTACT 1937 Query 349661 AAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCT 349720 || |||||||| | ||| || || | | || | ||||| || || || ||||| || Sbjct 1936 AAGGATGCTGGAACCATCGCTGGCCTCCAGGTCATGAGAATCATCAACGAGCCCACCGCC 1877 Query 349721 GCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTT 349780 || || ||||| ||||| || || || | | || ||| || || | ||| | ||| Sbjct 1876 GCCGCCATTGCTTATGGTCTGGACAAGAAG---GAAGGAGAGAAGAACGTGCTTGTGTTT 1820 Query 349781 GATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAA 349840 ||||| ||||| || || ||||| || || || || || | || | || ||||||| Sbjct 1819 GATTTGGGTGGCGGCACCTTTGACGTGTCTCTGCTGACCATCGACAATGGCGTTTTTGAG 1760 Query 349841 GTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGAT 349888 || || || |||||| || || | || ||||||||||| ||| Sbjct 1759 GTGGTGGCCACCAATGGTGACACTCACTTGGGAGGAGAAGATTTCGAT 1712 >seq104930 Length=294 Score = 105 bits (116), Expect = 2e-17 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 140601 GCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTT 140660 |||||||||||||| ||||| ||||| || ||||| || || ||||| |||||||| || Sbjct 3 GCAAAGATTAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATTTTAGCCTTG 62 Query 140661 ACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTT 140720 || || || || | || || || ||||| || | || | |||||||| || || || Sbjct 63 ACGTTCTCGATGGTGTCTGAGGGCTCAACCTCCAAGGTGATGGTCTTTCCAGTCAGGGTC 122 Query 140721 TTTACAAAAATCTGCATT 140738 || ||||| ||||||||| Sbjct 123 TTCACAAAGATCTGCATT 140 >seq5983 Length=204 Score = 104 bits (114), Expect = 7e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 140601 GCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTT 140660 |||||||||||||| ||||| ||||| || ||||| || || ||||| |||||||| || Sbjct 202 GCAAAGATTAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATTTTAGCCTTC 143 Query 140661 ACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTT 140720 || || || || | || || || || || || | || | |||||||| || || || Sbjct 142 ACGTTCTCGATGGTGTCTGAGGGCTCGACCTCCAAGGTGATGGTCTTTCCAGTCAGAGTC 83 Query 140721 TTTACAAAAATCTGCAT 140737 |||||||| |||||||| Sbjct 82 TTTACAAAGATCTGCAT 66 >seq323066 Length=706 Score = 86.0 bits (94), Expect = 2e-11 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 |||||||| || || |||||| | | ||||||||||| | || ||||| ||||| Sbjct 244 CCCGAAGAGATCAGCTCCATGGTTCTGGCGAAAATGAAGGAGACCGCGGAAGCTTATTTG 185 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || | ||||| || | ||||| | || || || || || || || || || ||| | Sbjct 184 GGAGCCACAGTTACAAACGCTGTGGTCACCGTCCCTGCATACTTCAACGACGCTCAGAGG 125 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || || ||||| ||| || || | ||||| || ||||| || ||||| Sbjct 124 CAGGCGACCAAGGACGCTGGTGCCATCGCTGGCCTGAATGTACTTAGAATCATCAATGAG 65 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAA 349748 ||||| || || || | || || || || || |||| Sbjct 64 CCCACCGCGGCTGCCCTGGCCTACGGACTGGACAAAA 28 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1507840797662595