Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq347318 131 2e-25 seq41842 114 1e-20 seq298802 96.9 4e-15 seq303592 91.5 2e-13 >seq347318 Length=1073 Score = 131 bits (144), Expect = 2e-25 Identities = 199/280 (71%), Gaps = 4/280 (1%) Strand=Plus/Plus Query 19196 TTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGC 19255 ||||| || || | || ||||| |||||||| | || ||| || || | || || Sbjct 786 TTCACTCATGCCTCCCCCACCCTGTTCAACGCTGCCACCGTCAAACCTCAACTCTCAAGT 845 Query 19256 TGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAG 19315 || ||||| | | |||||||||||||||||||||||||||||||| || || ||| || Sbjct 846 TGCTTCCTGCTAACCATGAAGGATGACAGCATTGAGGGCATCTACGACACTCTGAAGCAG 905 Query 19316 TGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCACTGCTCGAAT--ATCCGGT 19373 ||||| | ||||||||||| | || || || || | || || || | | ||||| Sbjct 906 TGCGCCCTCATCTCCAAGTCTGCAGGTGGCATTGGCGT-CAATG-TCCATTGCATCCGTG 963 Query 19374 CGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCC 19433 | ||| ||| || ||| || || ||| || || | || | || || ||||||| Sbjct 964 CCTCTGGCACATACATTGCTGGCACCAATGGAATATCCAATGGCCTTGTGCCCATGCTCC 1023 Query 19434 GCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGG 19473 | |||| ||||||||| ||| | || || ||||||| || Sbjct 1024 GAGTCTACAACAACACCGCCCGCTATGTTGACCAGGGTGG 1063 Score = 122 bits (134), Expect = 1e-22 Identities = 197/280 (70%), Gaps = 4/280 (1%) Strand=Plus/Minus Query 79531 CCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCG 79590 || ||||||| || || ||||| ||||||||| | ||||||||||||||||| | ||| Sbjct 1063 CCACCCTGGTCAACATAGCGGGCGGTGTTGTTGTAGACTCGGAGCATGGGCACAAGGCCA 1004 Query 79591 TCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGT--TCGAGCAGT 79648 | || | || || || || || ||| || || || ||| | || || | Sbjct 1003 TTGGATATTCCATTGGTGCCAGCAATGTATGTGCCAGAGGCACGGATGCAATGGA-CATT 945 Query 79649 GGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGA 79708 | | || ||||| || | ||||||||||| | ||||||| ||| || || ||||||| Sbjct 944 G-ACGCCAATGCCACCTGCAGACTTGGAGATGAGGGCGCACTGCTTCAGAGTGTCGTAGA 886 Query 79709 TGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGT 79768 ||||||| || ||| |||||||| | | ||||||||| || || | || || ||| Sbjct 885 TGCCCTCAATGCTGTCATCCTTCATGGTTAGCAGGAAGCAACTTGAGAGTTGAGGTTTGA 826 Query 79769 TCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAA 79808 || | |||||||| ||||| || | || || ||||| Sbjct 825 CGGTGGCAGCGTTGAACAGGGTGGGGGAGGCATGAGTGAA 786 >seq41842 Length=226 Score = 114 bits (126), Expect = 1e-20 Identities = 95/116 (82%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 20606 ATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATC 20665 || || ||| | ||||||||| | |||||||| || |||||||| || |||||||||||| Sbjct 185 ATTCCTCAGGATCTCAAGGACTTGTACAGGACTGTGTGGGAAATTCCCCAGAAGAGCATC 126 Query 20666 ATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGT 20721 | || ||||| ||||| || || |||||||| |||||| |||||| |||||||| Sbjct 125 CTGGAGATGGCTGCCGACCGTGGAGCCTACATTGACCAGAGCCAGTCTCTCAATGT 70 >seq298802 Length=733 Score = 96.9 bits (106), Expect = 4e-15 Identities = 93/117 (79%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 20355 AGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGA 20414 |||||||| ||||| | |||||||| |||| || || |||||||| |||||||| | Sbjct 544 AGATCAAGCAGCACGGCGTCCGCAACTCCCTGCTGGTGGCTCCCATGCCAACCGCCTCCA 485 Query 20415 CCGCCCAGATCATGGGGAACAACGAG-GCTTTCGAGCCGTACACGACCAACATCTAC 20470 | || |||||| | || ||||||||| || || ||||| ||||| ||||||||||| Sbjct 484 CTGCTCAGATCCTCGGCAACAACGAGAGCATT-GAGCCATACACCTCCAACATCTAC 429 Score = 93.3 bits (102), Expect = 5e-14 Identities = 97/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 78526 CGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGC-CTCGTTGTTCCCCATGATCTG 78584 ||||| ||||||||||| ||||| ||||| || || ||||||||| || | |||||| Sbjct 421 CGGCGGGTGTAGATGTTGGAGGTGTATGGCTC-AATGCTCTCGTTGTTGCCGAGGATCTG 479 Query 78585 GGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTT 78644 || || |||||||| |||||||| || ||||| || || || || | || ||| ||| Sbjct 480 AGCAGTGGAGGCGGTTGGCATGGGAGCCACCAGCAGGGAGTTGCGGACGCCGTGCTGCTT 539 Query 78645 GATCT 78649 ||||| Sbjct 540 GATCT 544 >seq303592 Length=754 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/117 (79%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 20355 AGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGA 20414 |||||||| ||||| | |||||||| |||| || || |||||||| || ||||| | Sbjct 198 AGATCAAGCAGCACGGCGTCCGCAACTCCCTGCTGGTTGCTCCCATGCCAACTGCCTCCA 257 Query 20415 CCGCCCAGATCATGGGGAACAACGAG-GCTTTCGAGCCGTACACGACCAACATCTAC 20470 | || |||||| | || ||||||||| || || ||||| ||||| ||||||||||| Sbjct 258 CTGCTCAGATCCTCGGCAACAACGAGAGCATT-GAGCCATACACCTCCAACATCTAC 313 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 78526 CGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGC-CTCGTTGTTCCCCATGATCTG 78584 ||||| ||||||||||| ||||| ||||| || || ||||||||| || | |||||| Sbjct 321 CGGCGGGTGTAGATGTTGGAGGTGTATGGCTC-AATGCTCTCGTTGTTGCCGAGGATCTG 263 Query 78585 GGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTT 78644 || || ||||| || |||||||| || ||||| || || || || | || ||| ||| Sbjct 262 AGCAGTGGAGGCAGTTGGCATGGGAGCAACCAGCAGGGAGTTGCGGACGCCGTGCTGCTT 203 Query 78645 GATCT 78649 ||||| Sbjct 202 GATCT 198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545906519715600