Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq347318 136 4e-27 seq298802 107 2e-18 seq303592 98.7 1e-15 seq21591 89.7 6e-13 >seq347318 Length=1073 Score = 136 bits (150), Expect = 4e-27 Identities = 202/283 (71%), Gaps = 4/283 (1%) Strand=Plus/Plus Query 53270 TACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCG 53329 || || || || ||| | || |||||||||||||||| || | ||||| | || Sbjct 783 TATTTCACTCATGCCTCCCCCACCCTGTTCAACGCTGCCACCGTCAAACCTCAACTCTCA 842 Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 || ||||||||| | | |||||||||||| || || ||||||||||| || || ||| Sbjct 843 AGTTGCTTCCTGCTAACCATGAAGGATGACAGCATTGAGGGCATCTACGACACTCTGAAG 902 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGA--ACGTCC 53447 |||| |||| ||||||||||| | ||||| || || | || || || | | ||| Sbjct 903 CAGTGCGCCCTCATCTCCAAGTCTGCAGGTGGCATTGGCGT-CAATG-TCCATTGCATCC 960 Query 53448 GTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGC 53507 |||| |||||| || || || || || | || |||| | ||||| |||| Sbjct 961 GTGCCTCTGGCACATACATTGCTGGCACCAATGGAATATCCAATGGCCTTGTGCCCATGC 1020 Query 53508 TCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 |||| |||| ||||||||| ||||| || || |||||||||| Sbjct 1021 TCCGAGTCTACAACAACACCGCCCGCTATGTTGACCAGGGTGG 1063 >seq298802 Length=733 Score = 107 bits (118), Expect = 2e-18 Identities = 92/111 (83%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | |||||||||||||| ||||| || ||||||||||| || || ||||||||| | Sbjct 530 GGCGTCCGCAACTCCCTGCTGGTGGCTCCCATGCCAACCGCCTCCACTGCTCAGATCCTC 471 Query 55538 GGCAACAACGAG-GCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCG 55587 |||||||||||| || || ||||| ||||| ||||||||||| ||||| Sbjct 470 GGCAACAACGAGAGCATT-GAGCCATACACCTCCAACATCTACACCCGCCG 421 >seq303592 Length=754 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/111 (81%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | |||||||||||||| || || || |||||||| || || || ||||||||| | Sbjct 212 GGCGTCCGCAACTCCCTGCTGGTTGCTCCCATGCCAACTGCCTCCACTGCTCAGATCCTC 271 Query 55538 GGCAACAACGAG-GCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCG 55587 |||||||||||| || || ||||| ||||| ||||||||||| ||||| Sbjct 272 GGCAACAACGAGAGCATT-GAGCCATACACCTCCAACATCTACACCCGCCG 321 >seq21591 Length=212 Score = 89.7 bits (98), Expect = 6e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| |||| |||||| | |||||||| || ||| || || |||||||| Sbjct 194 GTGAAGATGTAACGGGGGCTGGCTGAGTCCTTGCCTCCCTGCAGGCGAGTACCAAACTGA 135 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || ||||||| |||||| | ||| || | ||||| |||| ||| | Sbjct 134 CCATTGGGCAGCAGCAGGTTGATGTTGTTAGAGCCTACATAGTTCTGCGCCAGATTGATG 75 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 || ||| | |||| | ||| || || || || || | || || || | | || Sbjct 74 ATGGTGGACATCAGAGATGTTTCTCCATGATGGTAGGCTGAGTGTTCGGCAACAGAACCA 15 Query 152209 GCCAACTGCGCCAC 152222 |||||||| || || Sbjct 14 GCCAACTGAGCTAC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544603967027000