Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq159778 194 2e-44 seq315868 176 5e-39 seq75430 172 6e-38 seq41981 154 2e-32 seq41980 145 9e-30 seq104930 131 2e-25 seq5983 116 4e-21 seq168520 104 3e-17 seq303592 98.7 1e-15 seq298802 93.3 5e-14 >seq159778 Length=363 Score = 194 bits (214), Expect = 2e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || |||||||| || || | ||||| ||| | | Sbjct 270 ATGCAGATTTTCGTCAAGACCCTCACAGGCAAGACCATCACATTGGAGGTCGAGCCCTCT 211 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || ||||||||||| || |||||||| |||||| Sbjct 210 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAG 151 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| ||||| | ||||||| |||||| || | |||||||| Sbjct 150 CAGCGTCTCATCTTTGCTGGCAAGCAGTTAGAGGATGGTCGTACTCTGTCTGACTATAAC 91 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| || |||||||| ||||| ||| ||||||| || ||||| Sbjct 90 ATCCAAAAAGAGTCCACTCTCCATCTGGTCCTGCGTCTGCGTGGTGG 44 >seq315868 Length=823 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || || |||||||| ||| | ||||| ||| | | Sbjct 740 ATGCAGATCTTCGTTAAGACTCTGACTGGAAAGACTATCACTTTGGAGGTCGAGCCTTCT 681 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| | |||||||| ||||||||||||||||| || ||||| || ||| Sbjct 680 GACACCATTGAAAATGTCAAGGCTAAGATTCAGGACAAGGAGGGCATCCCTCCCGATCAG 621 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||| ||||| ||||| | || |||| |||||| || | ||||| || Sbjct 620 CAGCGTCTGATTTTCGCTGGCAAGCAGTTGGAAGATGGTCGTACTCTGTCCGACTACAAC 561 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| ||||| ||||| | || | ||||| || ||||| Sbjct 560 ATTCAGAAGGAGTCCACCCTTCACTTGGTGCTCCGTCTGCGTGGTGG 514 Score = 168 bits (186), Expect = 8e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || ||||| || || || || ||||| ||| | Sbjct 284 ATGCAGATCTTCGTTAAGACTCTGACTGGCAAAACCATCACCCTGGAGGTCGAGCCCTCG 225 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || |||| || ||||||||||||||||| || || ||||| || ||| Sbjct 224 GACACAATTGAGAACGTGAAAGCCAAAATTCAGGACAAGGAAGGTATCCCTCCCGATCAG 165 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || |||||||||||||| || ||||| | |||||||| | ||||| || Sbjct 164 CAGCGCTTGATCTTTGCTGGTAAGCAGCTTGAGGACGGCCGTACCCTTTCGGACTACAAC 105 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||||||||| || || | ||| ||||||| ||||||||| Sbjct 104 ATCCAGAAGGAATCCACCCTCCACTTGGTCCTGCGTCTGCGCGGTGGA 57 Score = 156 bits (172), Expect = 5e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||||||||| || || || || ||||| || || ||||| |||||| | Sbjct 512 ATGCAAATCTTTGTCAAAACCCTCACAGGAAAGACCATCACACTTGAAGTTGAGCCCTCA 453 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | ||||| || || || |||||||||||||| ||||| || ||| Sbjct 452 GACACAATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCCGATCAG 393 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| ||||| || ||||| | || || || |||||||||| Sbjct 392 CAGCGTCTCATCTTTGCTGGAAAGCAGCTTGAGGACGGCCGCACTCTCTCAGACTATAAC 333 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | || ||||| || || || || || || Sbjct 332 ATTCAGAAGGAGTCGACACTCCACCTGGT 304 >seq75430 Length=261 Score = 172 bits (190), Expect = 6e-38 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| ||||| || ||||| || ||| | ||||||||| | Sbjct 5 AATGCAGATCTTCGTTAAGACCCTTACTGGAAAGACCATCACTTTGGAGGTTGAGCCCTC 64 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | || | |||||||| || ||||||||||||||||| || || ||||| Sbjct 65 AGATACCATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCA 124 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| |||||||| || ||||| || ||||||| || ||||| | || || || Sbjct 125 GCAGCGTCTTATTTTTGCAGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCTGATTACAA 184 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || || || || ||||| || | ||||| |||||||| Sbjct 185 CATCCAGAAAGAGTCAACCCTCCATCTTGTTCTCCGTCTGCGCGGTGG 232 >seq41981 Length=230 Score = 154 bits (170), Expect = 2e-32 Identities = 151/195 (77%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| ||||| | ||||||||||| || ||| | ||||||||| | Sbjct 36 ATGCAAATTTTTGTGAAGACTTTGACCGGCAAGACCATCACTTTGGAGGTTGAGCCCTCC 95 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | |||||||| || |||||||| || || || ||||| |||||| Sbjct 96 GACACTATTGAGAATGTTAAGGCTAAGATCCAGGACAAAGAAGGCATCCCTCCCGACCAG 155 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| |||||||| || ||||| || || |||| || ||||| | ||||| || Sbjct 156 CAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 215 Query 27586 GTCCAAAAGGAATCC 27600 |||| ||||||||| Sbjct 216 ATCCAGAAGGAATCC 230 >seq41980 Length=230 Score = 145 bits (160), Expect = 9e-30 Identities = 149/195 (76%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| ||||| | || |||||||| || ||| | ||||||||| | Sbjct 36 ATGCAAATTTTTGTGAAGACTTTGACTGGCAAGACCATCACTTTGGAGGTTGAGCCCTCC 95 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | |||||||| || ||||||||||| || || ||||| |||||| Sbjct 96 GACACTATTGAGAACGTTAAGGCTAAGATCCAGGACAAGGAAGGCATCCCTCCCGACCAG 155 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||| || || ||||| || || |||| || ||||| | ||||| || Sbjct 156 CAGCGTCTCATTTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 215 Query 27586 GTCCAAAAGGAATCC 27600 |||| ||||||||| Sbjct 216 ATCCAGAAGGAATCC 230 >seq104930 Length=294 Score = 131 bits (144), Expect = 2e-25 Identities = 119/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 |||||||| || ||||||||||| || || ||||| || |||||||| | || |||||| Sbjct 289 AAGGCTAAGATCCAGGACAAGGAAGGTATCCCTCCCGATCAGCAGCGCTTGATCTTTGCT 230 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 |||||||| || ||||| | || ||||| | ||||| || |||| ||||||||||| Sbjct 229 GGTAAGCAGCTTGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAATCCACC 170 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || || | ||| ||||||| ||||||||| Sbjct 169 CTCCACTTGGTCCTGCGTCTGCGCGGTGGA 140 Score = 118 bits (130), Expect = 1e-21 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| || || || ||||| || || | ||||||||| | Sbjct 140 AATGCAGATCTTTGTGAAGACCCTGACTGGAAAGACCATCACCTTGGAGGTTGAGCCCTC 81 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | || | ||||||||||| ||||||||||||||||| || || ||||| Sbjct 80 AGACACCATCGAGAACGTCAAGGCTAAAATCCAGGACAAGGAGGGAATCCCCCCTGACCA 21 Query 27525 GCAGCGTCTAATTTTTGC 27542 |||||||||||| ||||| Sbjct 20 GCAGCGTCTAATCTTTGC 3 >seq5983 Length=204 Score = 116 bits (128), Expect = 4e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || || ||||| || || | ||||| ||| | Sbjct 66 ATGCAGATCTTTGTAAAGACTCTGACTGGAAAGACCATCACCTTGGAGGTCGAGCCCTCA 125 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||||||||| ||||||||||||||||| || || |||||| Sbjct 126 GACACCATCGAGAACGTGAAGGCTAAAATCCAGGACAAGGAGGGAATCCCCCCTGACCAG 185 Query 27526 CAGCGTCTAATTTTTGC 27542 ||||||||||| ||||| Sbjct 186 CAGCGTCTAATCTTTGC 202 >seq168520 Length=216 Score = 104 bits (114), Expect = 3e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || || || || || ||||| || || |||||||| ||| | Sbjct 196 ATGCAGATCTTCGTAAAAACCCTCACGGGGAAGACCATCACACTTGAGGTCGAGCCTTCA 137 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||| || || ||||||||||| || || || || || ||| Sbjct 136 GACACGATCGAAAATGTAAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGATCAG 77 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562 ||||| || ||||| || || ||||| || ||||||| Sbjct 76 CAGCGCCTTATTTTCGCCGGCAAGCAGCTAGAGGATG 40 >seq303592 Length=754 Score = 98.7 bits (108), Expect = 1e-15 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 80395 GTGTAAGGCTCAAATGC-CTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCAT 80453 ||||| ||||||| ||| ||||||||| |||||||||||||| ||| || || ||||| Sbjct 300 GTGTATGGCTCAA-TGCTCTCGTTGTTGCCGAGGATCTGAGCAGTGGAGGCAGTTGGCAT 242 Query 80454 CGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGA 80513 || | |||| ||| || || || | |||||||| |||||| | ||||||||| || | Sbjct 241 GGGAGCAACCAGCAGGGAGTTGCGGACGCCGTGCTGCTTGATCTTCTCGCGCAACTCAGG 182 Query 80514 CCA 80516 ||| Sbjct 181 CCA 179 >seq298802 Length=733 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/113 (80%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 80395 GTGTAAGGCTCAAATGC-CTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCAT 80453 ||||| ||||||| ||| ||||||||| |||||||||||||| ||| || || ||||| Sbjct 442 GTGTATGGCTCAA-TGCTCTCGTTGTTGCCGAGGATCTGAGCAGTGGAGGCGGTTGGCAT 500 Query 80454 CGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCA 80506 || | |||| ||| || || || | |||||||| |||||| | |||||||| Sbjct 501 GGGAGCCACCAGCAGGGAGTTGCGGACGCCGTGCTGCTTGATCTTCTCGCGCA 553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567588130238800