Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq315868 116 2e-21 seq159778 96.9 2e-15 seq41981 87.8 1e-12 seq41980 87.8 1e-12 seq75430 82.4 5e-11 >seq315868 Length=823 Score = 116 bits (128), Expect = 2e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556 ||||| ||||| || |||||| ||||||||||| ||||| || || || |||| || Sbjct 303 CACCAGGTGGAGTGTCGACTCCTTCTGAATGTTATAGTCTGAGAGAGTGCGGCCGTCCTC 362 Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616 ||| || || || ||||| || | |||||| || || || || | ||||||||||||| Sbjct 363 AAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGGAGGGATTCCCTCCTTGTCTTG 422 Query 34617 GATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTT 34675 |||| || | ||||| | |||||||||| | ||| ||||| | || || || | Sbjct 423 GATC-TTGGCCTTAACATTTTCAATTGTGTCTGAGGGCTCAACTTCAAGTGTGATGGTCT 481 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || | ||||| ||||| || ||||| Sbjct 482 TTCCTGTGAGGGTTTTGACAAAGATTTGCAT 512 >seq159778 Length=363 Score = 96.9 bits (106), Expect = 2e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||| |||||||||| ||| ||||| |||||||| || || || || || Sbjct 53 AGACGCAGGACCAGATGGAGAGTGGACTCTTTTTGGATGTTATAGTCAGACAGAGTACGA 112 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || | || || || ||||| || | |||||| ||||| || || | || ||| Sbjct 113 CCATCCTCTAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCGGGAGGAATGCCTTCC 172 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||||| | || ||| | ||| ||||| | ||| || |||| || Sbjct 173 TTGTCCTGGATCTTG-GCCTTCACGTTCTCAATGGTGTCAGAGGGCTCGACCTCCAATGT 231 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | || || || |||||||||||| Sbjct 232 GATGGTCTTGCCTGTGAGGGTCTTGACGAAAATCTGCATG 271 >seq41981 Length=230 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||| || ||||| || || || || || || | ||||| || || || |||||||| Sbjct 226 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAA 167 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || | |||||| ||||| || || | || || ||||| |||||| | ||||| | Sbjct 166 ATGAGACGCTGCTGGTCGGGAGGGATGCCTTCTTTGTCCTGGATCTTA-GCCTTAACATT 108 Query 34636 AA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 ||| ||||| | ||| || |||| || || || || ||||| || || ||||| Sbjct 107 CTCAATAGTGTCGGAGGGCTCAACCTCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTCAC 48 Query 34695 AAAAATCTGCAT 34706 |||||| ||||| Sbjct 47 AAAAATTTGCAT 36 >seq41980 Length=230 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||| || ||||| || || || || || || | ||||| || || || ||||| || Sbjct 226 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAA 167 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || | |||||| ||||| || || | || |||||||| |||||| | |||||| | Sbjct 166 ATGAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTA-GCCTTAACGTT 108 Query 34636 AA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 ||| ||||| | ||| || |||| || || || || || || || || ||||| Sbjct 107 CTCAATAGTGTCGGAGGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTCAC 48 Query 34695 AAAAATCTGCAT 34706 |||||| ||||| Sbjct 47 AAAAATTTGCAT 36 >seq75430 Length=261 Score = 82.4 bits (90), Expect = 5e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || | |||||| || ||| || || ||||| ||||| || || || || Sbjct 223 AGACGGAGAACAAGATGGAGGGTTGACTCTTTCTGGATGTTGTAATCAGACAGGGTGCGG 164 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || || ||||| || | |||||| ||||| || || | ||||||| Sbjct 163 CCATCCTCAAGCTGCTTGCCTGCAAAAATAAGACGCTGCTGGTCAGGGGGGATTCCCTCC 104 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | || || ||| | ||| || |||| || Sbjct 103 TTGTCCTGGATC-TTAGCCTTGACGTTCTCGATGGTATCTGAGGGCTCAACCTCCAAAGT 45 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || || || || |||||||| Sbjct 44 GATGGTCTTTCCAGTAAGGGTCTTAACGAAGATCTGCAT 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 313264854834545