Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq315868 156 4e-33 seq41981 125 6e-24 seq381734 118 9e-22 seq168520 104 2e-17 seq75430 95.1 1e-14 >seq315868 Length=823 Score = 156 bits (172), Expect = 4e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || |||||||| || ||| |||| ||| | || || || || || Sbjct 741 CATGCAGATCTTCGTTAAGACTCTGACTGGAAAGACTATCACTTTGGAGGTCGAGCCTTC 682 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | ||||| || ||||| ||||| || ||||| || |||||||| Sbjct 681 TGACACCATTGAAAATGTCAAGGCTAAGATTCAGGACAAGGAGGGCATCCCTCCCGATCA 622 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||| ||||| || |||||||| || || | ||||| ||||| Sbjct 621 GCAGCGTCTGATTTTCGCTGGCAAGCAGTTGGAAGATGGTCGTACTCTGTCCGACTACAA 562 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| |||||||| ||| | || ||||| | ||| |||| ||||| || Sbjct 561 CATTCAGAAGGAGTCCACCCTTCACTTGGTGCTCCGTCTGCGTGGTGGTAT 511 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| || || || ||| | || || |||||||| || || || Sbjct 512 ATGCAAATCTTTGTCAAAACCCTCACAGGAAAGACCATCACACTTGAAGTTGAGCCCTCA 453 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || |||||||| || || || || |||||||| Sbjct 452 GACACAATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCCGATCAG 393 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || || | || ||| | || | || || || ||| Sbjct 392 CAGCGTCTCATCTTTGCTGGAAAGCAGCTTGAGGACGGCCGCACTCTCTCAGACTATAAC 333 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||||||||| | || |||| | | ||| |||| || || Sbjct 332 ATTCAGAAGGAGTCGACACTCCACCTGGTGCTCAGGTTGAGGGGAGGTAT 283 >seq41981 Length=230 Score = 125 bits (138), Expect = 6e-24 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||| ||||||||||| | || ||| | || || || || ||| Sbjct 36 ATGCAAATTTTTGTGAAGACTTTGACCGGCAAGACCATCACTTTGGAGGTTGAGCCCTCC 95 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || || |||||||||||||| || ||||| || Sbjct 96 GACACTATTGAGAATGTTAAGGCTAAGATCCAGGACAAAGAAGGCATCCCTCCCGACCAG 155 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||||| || ||||||| | ||| | ||||| |||||| Sbjct 156 CAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 215 Query 27168 ATTCAAAAGGAGTC 27181 || || ||||| || Sbjct 216 ATCCAGAAGGAATC 229 >seq381734 Length=9470 Score = 118 bits (130), Expect = 9e-22 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| ||||| |||||| | || || ||||| ||||| || || Sbjct 232 ATGCAGATCTTCGTGAAAACACTGACTGGCAAGACCATCACCCTTGAGGTGGAGCCATCT 173 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| |||||||||||||| ||||| || || || || || Sbjct 172 GACACAATCGAGAATGTCAAGGCGAAAATTCAAGACAAGGAAGGTATTCCTCCTGACCAG 113 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||| ||||| || ||||||| || ||| | || || ||||| Sbjct 112 CAGAGATTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAT 53 Query 27168 ATTCAAAAGG 27177 || || |||| Sbjct 52 ATCCAGAAGG 43 >seq168520 Length=216 Score = 104 bits (114), Expect = 2e-17 Identities = 139/192 (72%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || |||||||| || || || ||| | || || ||||| || || || || Sbjct 197 CATGCAGATCTTCGTAAAAACCCTCACGGGGAAGACCATCACACTTGAGGTCGAGCCTTC 138 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| || | || || || || || ||||| |||||||| || || ||||| Sbjct 137 AGACACGATCGAAAATGTAAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGATCA 78 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||||||||| || | || || | || | ||||||||||| Sbjct 77 GCAGCGCCTTATTTTCGCCGGCAAGCAGCTAGAGGATGGACGCACTCTCTCCGATTACAA 18 Query 27167 CATTCA-AAAGG 27177 |||||| ||||| Sbjct 17 CATTCAGAAAGG 6 >seq75430 Length=261 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || ||| | || ||| | || || || || || Sbjct 6 ATGCAGATCTTCGTTAAGACCCTTACTGGAAAGACCATCACTTTGGAGGTTGAGCCCTCA 65 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| ||||| || || || ||||| || || || || || || || Sbjct 66 GATACCATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCAG 125 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||| || | || || | ||| | || ||||||||| Sbjct 126 CAGCGTCTTATTTTTGCAGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCTGATTACAAC 185 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| ||| | ||| | ||| | ||| |||| |||||||| Sbjct 186 ATCCAGAAAGAGTCAACCCTCCATCTTGTTCTCCGTCTGCGCGGTGGCAT 235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432897483707945