Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq315868 107 1e-18 seq168520 104 2e-17 seq41981 98.7 7e-16 seq75430 87.8 1e-12 seq159778 86.0 4e-12 >seq315868 Length=823 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||||||||| ||||| || ||||| || |||||||| || | Sbjct 512 ATGCAAATCTTTGTCAAAACCCTCACAGGAAAGACCATCACACTTGAAGTTGAGCCCTCA 453 Query 23671 GACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| ||| |||| |||| | || || ||||| || || | || || ||||| Sbjct 452 GACACAATTGAAAATGTTAAGGC-CAAGATCCAAGACAAGGAGGGAATCCCTCCCGATCA 394 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| || || || || || |||| |||||| | || || || Sbjct 393 GCAGCGTCTCATCTTTGCTGGAAAGCAGCTTGAGGACGGCCGCACTCTCTCAGACTATAA 334 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || ||||| ||| | || | || | |||||| | ||||| Sbjct 333 CATTCAGAAGGAGTCGACACTCCACCTGGTGCTCAGGTTGAGGGGAGG 286 >seq168520 Length=216 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||||||||| || || ||||| || || || || | | Sbjct 196 ATGCAGATCTTCGTAAAAACCCTCACGGGGAAGACCATCACACTTGAGGTCGAGCCTTCA 137 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| |||| || || ||||| ||||| | || || ||||| Sbjct 136 GACACGATCGAAAATGTAAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGATCAG 77 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || |||||||| || || || || | ||||||| | |||||||||| Sbjct 76 CAGCGCCTTATTTTCGCCGGCAAGCAGCTAGAGGATGGACGCACTCTCTCCGATTACAAC 17 Query 23791 ATACAAAAAG 23800 || || |||| Sbjct 16 ATTCAGAAAG 7 >seq41981 Length=230 Score = 98.7 bits (108), Expect = 7e-16 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || || | || || || || |||||| | || ||||| || | Sbjct 36 ATGCAAATTTTTGTGAAGACTTTGACCGGCAAGACCATCACTTTGGAGGTTGAGCCCTCC 95 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| |||| | || | | ||||||||||| | || || || || Sbjct 96 GACACTATTGAGAATGTTAAGGCTAAGA-TCCAGGACAAAGAAGGCATCCCTCCCGACCA 154 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||||||||| || |||||||| | ||||| | ||| ||||| Sbjct 155 GCAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 214 Query 23790 CATACAAAAAGAGTCC 23805 ||| || || || ||| Sbjct 215 CATCCAGAAGGAATCC 230 >seq75430 Length=261 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| |||||||| ||||| || ||||| || |||||| | || ||||| || | Sbjct 5 AATGCAGATCTTCGTTAAGACCCTTACTGGAAAGACCATCACTTTGGAGGTTGAGCCCTC 64 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || | | || || || ||||| || || | || || || || Sbjct 65 AGATACCATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCA 124 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| ||||| || || || || | ||||| | |||||||| Sbjct 125 GCAGCGTCTTATTTTTGCAGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCTGATTACAA 184 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || |||||||| || | ||| | ||| Sbjct 185 CATCCAGAAAGAGTCAACCCTCCATCTTGTT 215 >seq159778 Length=363 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || |||||||| || || || ||||| | || || || || | Sbjct 270 ATGCAGATTTTCGTCAAGACCCTCACAGGCAAGACCATCACATTGGAGGTCGAGCCCTCT 211 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| ||||| | || || || || Sbjct 210 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAG 151 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| ||||| || | || || | || ||| | || || ||| Sbjct 150 CAGCGTCTCATCTTTGCTGGCAAGCAGTTAGAGGATGGTCGTACTCTGTCTGACTATAAC 91 Query 23791 ATACAAAAAGAGTCCAC 23807 || |||||||||||||| Sbjct 90 ATCCAAAAAGAGTCCAC 74 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 336436510187420