Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq159778 161 2e-34 seq41980 136 9e-27 seq381734 134 3e-26 seq168520 131 4e-25 seq315868 118 3e-21 seq104930 98.7 2e-15 seq5983 89.7 1e-12 >seq159778 Length=363 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| || ||||||||||| |||||||||| || || || | || ||| Sbjct 49 ACGCAGACGCAGGACCAGATGGAGAGTGGACTCTTTTTGGATGTTATAGTCAGACAGAGT 108 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| |||| |||||| ||||| ||||| || || || |||||||| ||||| || Sbjct 109 ACGACCATCCTCTAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCGGGAGGAATGCC 168 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| |||||||| |||||| || |||||||| |||| || || || || Sbjct 169 TTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCAGAGGGCTCGACCTCCAA 228 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | || || | ||| | ||||| Sbjct 229 TGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAAATCTGCAT 270 >seq41980 Length=230 Score = 136 bits (150), Expect = 9e-27 Identities = 147/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 225519 GGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGC 225578 |||||| || |||| ||||| |||| || || | |||||||| |||||||| || || Sbjct 230 GGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGC 171 Query 225579 GAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCAC 225638 ||| || || || || |||||||| || || ||||||||||| |||||||| ||| || Sbjct 170 GAAAATGAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTAAC 111 Query 225639 AGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTT 225698 || || ||||| |||| || || || || ||||| |||||||| |||||||| || Sbjct 110 GTTCTCAATAGTGTCGGAGGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTT 51 Query 225699 TATGAACACTTGCAT 225713 | || | |||||| Sbjct 50 CACAAAAATTTGCAT 36 >seq381734 Length=9470 Score = 134 bits (148), Expect = 3e-26 Identities = 143/189 (76%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| |||||| || | || || | |||||||| |||||||| ||||||||||| Sbjct 45 TTCTGGATATTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATC 104 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | || || ||||| || |||||||||||||||||||| || || ||| ||| ||| Sbjct 105 AATCTCTGCTGGTCAGGAGGAATACCTTCCTTGTCTTGAATTTTCGCCTTGACATTCTCG 164 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705 || ||||| || | ||||| || | ||||| |||||||| |||| ||||| | ||| Sbjct 165 ATTGTGTCAGATGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGTGTTTTCACGAAG 224 Query 225706 ACTTGCATT 225714 | |||||| Sbjct 225 ATCTGCATT 233 >seq168520 Length=216 Score = 131 bits (144), Expect = 4e-25 Identities = 143/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 |||| || | |||||||||| | ||| | ||||| ||||||||||| || ||||| | Sbjct 7 CTTTCTGAATGTTGTAATCGGAGAGAGTGCGTCCATCCTCTAGCTGCTTGCCGGCGAAAA 66 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643 |||| || || || || || || || ||||||||||| |||||||| ||| ||| || Sbjct 67 TAAGGCGCTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTTACATTTT 126 Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGA 225703 |||| |||||||| | || || || | ||||| ||||| ||||| | ||||||| || Sbjct 127 CGATCGTGTCTGAAGGCTCGACCTCAAGTGTGATGGTCTTCCCCGTGAGGGTTTTTACGA 186 Query 225704 ACACTTGCAT 225713 | | ||||| Sbjct 187 AGATCTGCAT 196 >seq315868 Length=823 Score = 118 bits (130), Expect = 3e-21 Identities = 161/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | |||||| | |||||| |||||||| || |||| ||||| || | | || Sbjct 64 CGCAGACGCAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTA 123 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| ||||| ||||| | || || || ||||| || |||||| Sbjct 124 CGGCCGTCCTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGATCGGGAGGGATACCT 183 Query 225613 TCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || || ||| || ||||| || || ||||| |||| || || || | Sbjct 184 TCCTTGTCCTGAAT-TTTGGCTTTCACGTTCTCAATTGTGTCCGAGGGCTCGACCTCCAG 242 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || ||||| |||| ||| || | ||| | ||||| Sbjct 243 GGTGATGGTTTTGCCAGTCAGAGTCTTAACGAAGATCTGCAT 284 Score = 118 bits (130), Expect = 3e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225499 CTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCA 225558 || || || |||||||| || || || || || | || || || | | ||| | || Sbjct 298 CTGAGCACCAGGTGGAGTGTCGACTCCTTCTGAATGTTATAGTCTGAGAGAGTGCGGCCG 357 Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618 || || |||||||| ||||| ||||| || || || || ||||| || || || |||||| Sbjct 358 TCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGGAGGGATTCCCTCCTTG 417 Query 225619 TCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678 ||||||||||| ||| ||| ||| || |||||||||| || || || | ||||| Sbjct 418 TCTTGGATCTTGGCCTTAACATTTTCAATTGTGTCTGAGGGCTCAACTTCAAGTGTGATG 477 Query 225679 GTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || | ||||| | || | |||||| Sbjct 478 GTCTTTCCTGTGAGGGTTTTGACAAAGATTTGCAT 512 >seq104930 Length=294 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | |||||| | |||||| |||||||| || |||| ||||| || | | || Sbjct 147 CGCAGACGCAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTG 206 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| ||||| ||||| | || || || ||||| || |||||| Sbjct 207 CGGCCGTCCTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGATCGGGAGGGATACCT 266 Query 225613 TCCTTGTCTTGGATCTT 225629 |||||||| |||||||| Sbjct 267 TCCTTGTCCTGGATCTT 283 >seq5983 Length=204 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || ||||| || || || ||||| || || || || |||||||| ||||| || |||| Sbjct 202 GCAAAGATTAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATTTTAGCCTTC 143 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 || |||||||||||||||| || || || || ||||| ||||| || |||| ||| Sbjct 142 ACGTTCTCGATGGTGTCTGAGGGCTCGACCTCCAAGGTGATGGTCTTTCCAGTCAGAGTC 83 Query 225697 TTTATGAACACTTGCAT 225713 |||| || | ||||| Sbjct 82 TTTACAAAGATCTGCAT 66 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186696567814310