Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq347318 136 6e-27 seq303592 100 4e-16 seq298802 100 4e-16 seq6450 86.0 9e-12 seq6449 86.0 9e-12 >seq347318 Length=1073 Score = 136 bits (150), Expect = 6e-27 Identities = 287/428 (67%), Gaps = 0/428 (0%) Strand=Plus/Minus Query 76748 TTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATA 76807 || || || ||||| || | ||| | ||| ||||| || || |||| | ||| || | | Sbjct 1069 TTGTTTCCACCCTGGTCAACATAGCGGGCGGTGTTGTTGTAGACTCGGAGCATGGGCACA 1010 Query 76808 ATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTA 76867 | ||| || ||| | ||||| || |||| ||| || | ||| | ||||| || | Sbjct 1009 AGGCCATTGGATATTCCATTGGTGCCAGCAATGTATGTGCCAGAGGCACGGATGCAATGG 950 Query 76868 ATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCA 76927 | | | ||| || || ||||| || ||||| || || || | |||| ||||| Sbjct 949 ACATTGACGCCAATGCCACCTGCAGACTTGGAGATGAGGGCGCACTGCTTCAGAGTGTCG 890 Query 76928 TAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGA 76987 ||||||||||| || || |||||| ||||| | || || || || || || | |||| | Sbjct 889 TAGATGCCCTCAATGCTGTCATCCTTCATGGTTAGCAGGAAGCAACTTGAGAGTTGAGGT 830 Query 76988 TGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGT 77047 | || || | || || |||| || || || ||||||||||| | ||| || || Sbjct 829 TTGACGGTGGCAGCGTTGAACAGGGTGGGGGAGGCATGAGTGAAATAGCGTTCCGACAGC 770 Query 77048 AGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGC 77107 |||||||| || || || || || ||| ||| || || ||||| || | | Sbjct 769 AGATTGTAGGTGATGATGGTGGCATCAATGTCCTCACCATGGATACCAACAGCAACTCTC 710 Query 77108 ATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTT 77167 |||| ||| ||||| || || || | ||||| | || || |||||||||| | Sbjct 709 ATCAGCATGTGCTGCGGGCGCTCGGCCACTTTATTGTCAATGCGCAGCAAGTATGATCGT 650 Query 77168 TCCAAAGT 77175 |||| ||| Sbjct 649 TCCAGAGT 642 >seq303592 Length=754 Score = 100 bits (110), Expect = 4e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 75626 TGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTC 75685 ||||||||||| || | ||| || || || ||||||| |||||||||||| | Sbjct 438 TGAATGGATCCTCCGTGAGAAATGATAGTGGTCTTGATGCCATCATTCCACAGGCCCTGC 379 Query 75686 TCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTT 75745 ||||| | |||| || || ||| | || |||| ||| ||||||||||| | || | Sbjct 378 TCGGTCAGGTCTCTGAGCAGGTGATGGTTGACAACTTGGAATTCTCCAGAAAGCACACGG 319 Query 75746 CGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCA 75805 || ||||| || || ||| ||||| || | || ||||| || | || |||||| Sbjct 318 CGGGTGTAGATGTTGGAGGTGTATGGCTCAATGCTCTCGTTGTTGCCGAGGATCTGAGCA 259 Query 75806 GTTGAAGCAGTCGGCATAGGTGCCACCA 75833 || || ||||| ||||| || || |||| Sbjct 258 GTGGAGGCAGTTGGCATGGGAGCAACCA 231 >seq298802 Length=733 Score = 100 bits (110), Expect = 4e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 75626 TGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTC 75685 ||||||||||| || | ||| || || || ||||||| |||||||||||| | | Sbjct 304 TGAATGGATCCTCCGTGAGAAATGATAGTGGTCTTGATGCCATCATTCCACAGGCCTTGC 363 Query 75686 TCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTT 75745 || || | |||| || || ||| | || |||| ||| ||||||||||| | || | Sbjct 364 TCAGTCAGGTCTCTGAGCAGGTGATGGTTGACAACTTGGAATTCTCCAGAGAGCACACGG 423 Query 75746 CGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCA 75805 || ||||| || || ||| ||||| || | || ||||| || | || |||||| Sbjct 424 CGGGTGTAGATGTTGGAGGTGTATGGCTCAATGCTCTCGTTGTTGCCGAGGATCTGAGCA 483 Query 75806 GTTGAAGCAGTCGGCATAGGTGCCACCA 75833 || || || || ||||| || ||||||| Sbjct 484 GTGGAGGCGGTTGGCATGGGAGCCACCA 511 >seq6450 Length=203 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 46915 AGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTT 46974 ||||| ||||| || || || |||||||| || || ||||| || || || ||||| || Sbjct 154 AGACTGTACATCTCAGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAGAAACACCTG 95 Query 46975 GCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCA 47034 ||||| || | || || || | |||| |||| || |||||||||||| |||||| Sbjct 94 GCTTCGGTGACTTGCACTTCCTGGCTGAATCTTTCAACCAGATTCTCATTCACAATTCCA 35 Query 47035 TCACTAGCAGCAAAAAATGC 47054 ||| || ||||| || || Sbjct 34 TCAGAGGCGGCAAAGAAGGC 15 >seq6449 Length=203 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 46915 AGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTT 46974 ||||| |||||||| || || |||||||| || || ||||| || || || ||||| || Sbjct 154 AGACTGTACATTTCAGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAGAAACACCTG 95 Query 46975 GCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCA 47034 ||||| || | || || || | |||| ||| || |||||||||||| |||||| Sbjct 94 GCTTCGGTGACTTGCACTTCCTGGCTGAATCTCTCAACCAGATTCTCATTCACAATTCCA 35 Query 47035 TCACTAGCAGCAAAAAATGC 47054 ||| || ||||| || || Sbjct 34 TCAGAGGCGGCAAAGAAGGC 15 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709531341316800