Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq75430 116 8e-21 seq168520 113 1e-19 seq381734 107 4e-18 seq159778 107 4e-18 seq315868 95.1 3e-14 seq41980 84.2 5e-11 >seq75430 Length=261 Score = 116 bits (128), Expect = 8e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| |||||||| || || |||||||| |||||||||||||| | | || | ||||| Sbjct 218 GAGAACAAGATGGAGGGTTGACTCTTTCTGGATGTTGTAATCAGACAGGGTGCGGCCATC 159 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || || || ||||| | ||||||||| | | |||||| ||||| || Sbjct 158 CTCAAGCTGCTTGCCTGCAAAAATAAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTC 99 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || ||||| |||| | | | ||||| ||| || || | ||| || || Sbjct 98 CTGGATCTTAGCCTTGACGTTCTCGATGGTATCTGAGGGCTCAACCTCCAAAGTGATGGT 39 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || ||||| ||||||| ||||||| Sbjct 38 CTTTCCAGTAAGGGTCTTAACGAAGATCTGCATT 5 >seq168520 Length=216 Score = 113 bits (124), Expect = 1e-19 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 151915 CTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGA 151974 |||| || ||||||||||||| | ||| | ||||| ||||| || |||||||| | Sbjct 7 CTTTCTGAATGTTGTAATCGGAGAGAGTGCGTCCATCCTCTAGCTGCTTGCCGGCGAAAA 66 Query 151975 TAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCT 152034 |||| | |||||| || | | ||| |||||||| || || || || || ||| | | Sbjct 67 TAAGGCGCTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTTACATTTT 126 Query 152035 CTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 | | |||||||| ||| || ||||| || || || || |||||||| || || |||| Sbjct 127 CGATCGTGTCTGAAGGCTCGACCTCAAGTGTGATGGTCTTCCCCGTGAGGGTTTTTACGA 186 Query 152095 AGACCTGCAT 152104 ||| |||||| Sbjct 187 AGATCTGCAT 196 >seq381734 Length=9470 Score = 107 bits (118), Expect = 4e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||| ||||| || | | || | |||||||| || || || |||||||| Sbjct 45 TTCTGGATATTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATC 104 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 | ||||||||||| | | || |||||||| ||||||||||| |||||| |||| Sbjct 105 AATCTCTGCTGGTCAGGAGGAATACCTTCCTTGTCTTGAATTTTCGCCTTGACATTCTCG 164 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | |||| || ||| || ||||| || || || ||||| || || || ||||||||| Sbjct 165 ATTGTGTCAGATGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGTGTTTTCACGAAG 224 Query 152097 ACCTGCATT 152105 | ||||||| Sbjct 225 ATCTGCATT 233 >seq159778 Length=363 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| ||||| ||||| ||||||||||||||||| || || | | ||| | ||||| Sbjct 59 AGGACCAGATGGAGAGTGGACTCTTTTTGGATGTTATAGTCAGACAGAGTACGACCATCC 118 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 |||| || || || ||||| || | ||||||||| | | || |||||||| || Sbjct 119 TCTAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCC 178 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || |||| | | |||| || ||| || || | || || || Sbjct 179 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCAGAGGGCTCGACCTCCAATGTGATGGTC 238 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| ||||| ||||| | |||||| Sbjct 239 TTGCCTGTGAGGGTCTTGACGAAAATCTGCAT 270 >seq315868 Length=823 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | || || || || || || ||||||||||| || | | || | || || Sbjct 73 AGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCC 132 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| | | |||||| || | | ||| |||||||| || Sbjct 133 TCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGATCGGGAGGGATACCTTCCTTGTCC 192 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| ||| || |||| | |||| || ||| || || || || || ||| Sbjct 193 TGAATTTTGGCTTTCACGTTCTCAATTGTGTCCGAGGGCTCGACCTCCAGGGTGATGGTT 252 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || |||||||| ||||||| |||||| Sbjct 253 TTGCCAGTCAGAGTCTTAACGAAGATCTGCAT 284 >seq41980 Length=230 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 151911 GACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCG 151970 || || || ||||||||||| |||| | || | |||||||| || || |||||| Sbjct 229 GATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCG 170 Query 151971 AAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACA 152030 || || || | ||||||||| | | ||| |||||||| || || || || || || Sbjct 169 AAAATGAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTAACG 110 Query 152031 GTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTC 152090 |||| | |||| || ||| || || | ||| || || ||||| || | ||||||| Sbjct 109 TTCTCAATAGTGTCGGAGGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTC 50 Query 152091 ACGAAGACCTGCAT 152104 || || | ||||| Sbjct 49 ACAAAAATTTGCAT 36 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1148175564071415