Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq315868 167 5e-36 seq159778 167 5e-36 seq75430 163 6e-35 seq41980 140 7e-28 seq168520 136 8e-27 seq381734 134 3e-26 seq41981 134 3e-26 seq104930 114 3e-20 seq5983 107 4e-18 seq21591 89.7 1e-12 >seq315868 Length=823 Score = 167 bits (184), Expect = 5e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||| || || |||| || | ||| ||| || |||||||||||||| | | Sbjct 58 CCACCGCGCAGACGCAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAA 117 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| ||||| || || || || ||||||||||| || || || || || Sbjct 118 AGGGTACGGCCGTCCTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGATCGGGAGGG 177 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||| |||||||| || || || ||||| ||| | || || |||||||| | ||||| Sbjct 178 ATACCTTCCTTGTCCTGAATTTTGGCTTTCACGTTCTCAATTGTGTCCGAGGGCTCGACC 237 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| || || || |||| |||||||||||| |||||||| Sbjct 238 TCCAGGGTGATGGTTTTGCCAGTCAGAGTCTTAACGAAGATCTGCAT 284 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || |||| || | ||| || || || ||||||||||| | Sbjct 513 ACCACCACGCAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGA 572 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || ||||| || | || || || || || |||| ||| || || || || Sbjct 573 CAGAGTACGACCATCTTCCAACTGCTTGCCAGCGAAAATCAGACGCTGCTGATCGGGAGG 632 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| || || || | || || ||||| |||| ||||| Sbjct 633 GATGCCCTCCTTGTCCTGAATCTTAGCCTTGACATTTTCAATGGTGTCAGAAGGCTCGAC 692 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | |||||| ||||| || |||| |||||||||||| |||||||| Sbjct 693 CTCCAAAGTGATAGTCTTTCCAGTCAGAGTCTTAACGAAGATCTGCAT 740 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || ||||| ||||| | || |||||||| ||||| || || || || |||||| Sbjct 322 TCCTTCTGAATGTTATAGTCTGAGAGAGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAG 381 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | ||| || || || || || |||||||||||||||||||| || || || | Sbjct 382 ATGAGACGCTGCTGATCGGGAGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTAACATTT 441 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || ||||| || | || ||||| || ||||| ||||| || || | || || || Sbjct 442 TCAATTGTGTCTGAGGGCTCAACTTCAAGTGTGATGGTCTTTCCTGTGAGGGTTTTGACA 501 Query 283089 AATATCTGCAT 283099 || || ||||| Sbjct 502 AAGATTTGCAT 512 >seq159778 Length=363 Score = 167 bits (184), Expect = 5e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || |||||||| | ||| |||||||||||||| ||||||| Sbjct 44 CCACCACGCAGACGCAGGACCAGATGGAGAGTGGACTCTTTTTGGATGTTATAGTCAGAC 103 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || |||||||||| || || || |||||||| | ||| || ||||| ||| Sbjct 104 AGAGTACGACCATCCTCTAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCGGGAGGA 163 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| |||||||| || || ||| | || || ||||| || | ||||| Sbjct 164 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCAGAGGGCTCGACC 223 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 224 TCCAATGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAAATCTGCAT 270 >seq75430 Length=261 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||| || || || ||||| | || ||||| ||||||||||| |||| Sbjct 232 CCACCGCGCAGACGGAGAACAAGATGGAGGGTTGACTCTTTCTGGATGTTGTAATCAGAC 173 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || || ||||| || | ||| || |||||| || Sbjct 172 AGGGTGCGGCCATCCTCAAGCTGCTTGCCTGCAAAAATAAGACGCTGCTGGTCAGGGGGG 113 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| || || || | || || Sbjct 112 ATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTATCTGAGGGCTCAACC 53 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || | |||||| ||||| || || | ||||||||||| ||||||||| Sbjct 52 TCCAAAGTGATGGTCTTTCCAGTAAGGGTCTTAACGAAGATCTGCATT 5 >seq41980 Length=230 Score = 140 bits (154), Expect = 7e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| || |||||||||||||| | || ||||||||||| || || || || ||||| || Sbjct 227 TTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAA 168 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 || | ||| || ||||| || || || |||||||| |||||||| || || ||| | Sbjct 167 AATGAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTAACGTT 108 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || |||||||| || | || || || | |||||| ||||| || ||||||||||| || Sbjct 107 CTCAATAGTGTCGGAGGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTCAC 48 Query 283088 GAATATCTGCAT 283099 || || ||||| Sbjct 47 AAAAATTTGCAT 36 >seq168520 Length=216 Score = 136 bits (150), Expect = 8e-27 Identities = 144/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 282910 CTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGA 282969 |||| || |||||||| || | || ||||| ||||||||||| || || ||||| || | Sbjct 7 CTTTCTGAATGTTGTAATCGGAGAGAGTGCGTCCATCCTCTAGCTGCTTGCCGGCGAAAA 66 Query 282970 TCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTAT 283029 | | || || || ||| || || || |||||||| |||||||| || ||||| | | Sbjct 67 TAAGGCGCTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTTACATTTT 126 Query 283030 CGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 |||| ||||| |||| ||||| || || ||||| ||||| ||||| | || || |||| Sbjct 127 CGATCGTGTCTGAAGGCTCGACCTCAAGTGTGATGGTCTTCCCCGTGAGGGTTTTTACGA 186 Query 283090 ATATCTGCAT 283099 | |||||||| Sbjct 187 AGATCTGCAT 196 >seq381734 Length=9470 Score = 134 bits (148), Expect = 3e-26 Identities = 143/189 (76%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || ||||| |||||||||| || ||||| ||||| || || || || || || |||||| Sbjct 45 TTCTGGATATTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATC 104 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 || | || |||||| |||||||| ||||||||||| || || || || || | ||| Sbjct 105 AATCTCTGCTGGTCAGGAGGAATACCTTCCTTGTCTTGAATTTTCGCCTTGACATTCTCG 164 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091 || ||||| || | || || || || ||||| ||||| || |||| || || ||||| Sbjct 165 ATTGTGTCAGATGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGTGTTTTCACGAAG 224 Query 283092 ATCTGCATT 283100 ||||||||| Sbjct 225 ATCTGCATT 233 >seq41981 Length=230 Score = 134 bits (148), Expect = 3e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| || |||||||||||||| | || ||||||||||| || || || || |||||||| Sbjct 227 TTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 168 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 || | ||| || ||||| || || || || ||||| |||||||| || || || | Sbjct 167 AATGAGACGCTGCTGGTCGGGAGGGATGCCTTCTTTGTCCTGGATCTTAGCCTTAACATT 108 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || |||||||| || | || || || | |||||| ||||| || ||||||||||| || Sbjct 107 CTCAATAGTGTCGGAGGGCTCAACCTCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTCAC 48 Query 283088 GAATATCTGCAT 283099 || || ||||| Sbjct 47 AAAAATTTGCAT 36 >seq104930 Length=294 Score = 114 bits (126), Expect = 3e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||| || || |||| || | ||| ||| || |||||||||||||| | | Sbjct 141 CCACCGCGCAGACGCAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAA 200 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| ||||| || || || || ||||||||||| || || || || || Sbjct 201 AGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGATCGGGAGGG 260 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACG 283025 ||||| |||||||| |||||||| || || ||| Sbjct 261 ATACCTTCCTTGTCCTGGATCTTAGCCTTAACG 293 Score = 100 bits (110), Expect = 6e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282961 CGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTT 283020 |||||||||| | ||| || |||||| || || ||||||||||| ||||| || || | Sbjct 1 CGGCAAAGATTAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATTTTAGCCT 60 Query 283021 TTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAG 283080 | ||| | ||||| ||||| || | || || || | ||||| ||||| || |||| | Sbjct 61 TGACGTTCTCGATGGTGTCTGAGGGCTCAACCTCCAAGGTGATGGTCTTTCCAGTCAGGG 120 Query 283081 TCTTAACGAATATCTGCATT 283100 |||| || || ||||||||| Sbjct 121 TCTTCACAAAGATCTGCATT 140 >seq5983 Length=204 Score = 107 bits (118), Expect = 4e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 282961 CGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTT 283020 |||||||||| | ||| || |||||| || || ||||||||||| ||||| || || | Sbjct 204 CGGCAAAGATTAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATTTTAGCCT 145 Query 283021 TTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAG 283080 | ||| | ||||| ||||| || | ||||| || | ||||| ||||| || |||| || Sbjct 144 TCACGTTCTCGATGGTGTCTGAGGGCTCGACCTCCAAGGTGATGGTCTTTCCAGTCAGAG 85 Query 283081 TCTTAACGAATATCTGCAT 283099 |||| || || |||||||| Sbjct 84 TCTTTACAAAGATCTGCAT 66 >seq21591 Length=212 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 273780 GTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGA 273839 ||||| ||||| | || || || ||||||||| || ||||| | | |||||||||| Sbjct 194 GTGAAGATGTAACGGGGGCTGGCTGAGTCCTTGCCTCCCTGCAGGCGAGTACCAAACTGA 135 Query 273840 CCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACG 273899 || | |||||| ||| ||| |||||||| || || || | ||| |||| ||| | | Sbjct 134 CCATTGGGCAGCAGCAGGTTGATGTTGTTAGAGCCTACATAGTTCTGCGCCAGATTGATG 75 Query 273900 ATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCA 273959 || || | || ||| || || || || ||||| ||||||||| | | ||||| Sbjct 74 ATGGTGGACATCAGAGATGTTTCTCCATGATGGTAGGCTGAGTGTTCGGCAACAGAACCA 15 Query 273960 CTGAACTGAGCAAC 273973 |||||||| || Sbjct 14 GCCAACTGAGCTAC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1041617876359710