Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq75430 158 3e-33 seq41981 138 3e-27 seq315868 136 9e-27 seq381734 127 5e-24 seq104930 114 3e-20 seq5983 111 4e-19 >seq75430 Length=261 Score = 158 bits (174), Expect = 3e-33 Identities = 159/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || ||||| || ||||| | ||||| || |||||| Sbjct 9 CAGATCTTCGTTAAGACCCTTACTGGAAAGACCATCACTTTGGAGGTTGAGCCCTCAGAT 68 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| |||||||| || |||||||| || |||||||| Sbjct 69 ACCATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCAGCAG 128 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| || || || || ||||| || ||||| | || || | ||||| ||| || Sbjct 129 CGTCTTATTTTTGCAGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCTGATTACAACATC 188 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || ||||| ||||| || ||||||||| Sbjct 189 CAGAAAGAGTCAACCCTCCATCTTGTT 215 >seq41981 Length=230 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||| ||| | || || || || ||||| | ||||| || ||| ||| Sbjct 39 CAAATTTTTGTGAAGACTTTGACCGGCAAGACCATCACTTTGGAGGTTGAGCCCTCCGAC 98 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || ||||| |||||||||||||| |||||||| |||||||| Sbjct 99 ACTATTGAGAATGTTAAGGCTAAGATCCAGGACAAAGAAGGCATCCCTCCCGACCAGCAG 158 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || ||||| || ||||| |||||||| | || || |||| || ||| || Sbjct 159 CGTCTCATTTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACATC 218 Query 178104 CAAAAAGAATC 178114 || || ||||| Sbjct 219 CAGAAGGAATC 229 >seq315868 Length=823 Score = 136 bits (150), Expect = 9e-27 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||| || || ||||| |||||||| ||||| || ||| ||| Sbjct 281 CAGATCTTCGTTAAGACTCTGACTGGCAAAACCATCACCCTGGAGGTCGAGCCCTCGGAC 222 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| ||| || ||||||||||| ||||| |||||||| || ||||| Sbjct 221 ACAATTGAGAACGTGAAAGCCAAAATTCAGGACAAGGAAGGTATCCCTCCCGATCAGCAG 162 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || || ||||| || || || | || ||| | || || ||| || Sbjct 161 CGCTTGATCTTTGCTGGTAAGCAGCTTGAGGACGGCCGTACCCTTTCGGACTACAACATC 102 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| || || || |||| Sbjct 101 CAGAAGGAATCCACCCTCCA-CTTG 78 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| ||||||||||| || ||||| || || || || ||||||| Sbjct 509 CAAATCTTTGTCAAAACCCTCACAGGAAAGACCATCACACTTGAAGTTGAGCCCTCAGAC 450 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| || ||||| || ||||||||||| || ||||| Sbjct 449 ACAATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCCGATCAGCAG 390 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || ||||| ||||| || || || | ||||| | || |||||| | Sbjct 389 CGTCTCATCTTTGCTGGAAAGCAGCTTGAGGACGGCCGCACTCTCTCAGACTATAACATT 330 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || ||||| || || || Sbjct 329 CAGAAGGAGTCGACACTCCACCTGGT 304 Score = 123 bits (136), Expect = 6e-23 Identities = 151/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||| || ||||| || ||||| | ||||| || || ||| Sbjct 737 CAGATCTTCGTTAAGACTCTGACTGGAAAGACTATCACTTTGGAGGTCGAGCCTTCTGAC 678 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| |||||||||||||| || || |||||||| || ||||| Sbjct 677 ACCATTGAAAATGTCAAGGCTAAGATTCAGGACAAGGAGGGCATCCCTCCCGATCAGCAG 618 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || ||| | |||||||| | ||||| |||| || ||| | Sbjct 617 CGTCTGATTTTCGCTGGCAAGCAGTTGGAAGATGGTCGTACTCTGTCCGACTACAACATT 558 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 557 CAGAAGGAGTCCACCCTTCA-CTTG 534 >seq381734 Length=9470 Score = 127 bits (140), Expect = 5e-24 Identities = 121/155 (78%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| || || || || || |||||||| |||||||| || ||| Sbjct 229 CAGATCTTCGTGAAAACACTGACTGGCAAGACCATCACCCTTGAGGTGGAGCCATCTGAC 170 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| ||||| || ||||| ||||| ||||| || ||||| |||||||| Sbjct 169 ACAATCGAGAATGTCAAGGCGAAAATTCAAGACAAGGAAGGTATTCCTCCTGACCAGCAG 110 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 || | |||||||| || || ||||| |||||||| Sbjct 109 AGATTGATCTTCGCTGGCAAGCAGCTGGAAGATGG 75 >seq104930 Length=294 Score = 114 bits (126), Expect = 3e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || ||||| || |||||| | ||||| || ||||||| Sbjct 136 CAGATCTTTGTGAAGACCCTGACTGGAAAGACCATCACCTTGGAGGTTGAGCCCTCAGAC 77 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| || || |||||||| || |||||||| || |||||||| Sbjct 76 ACCATCGAGAACGTCAAGGCTAAAATCCAGGACAAGGAGGGAATCCCCCCTGACCAGCAG 17 Query 178044 CGACTTATCTTCGCCG 178059 || || ||||| |||| Sbjct 16 CGTCTAATCTTTGCCG 1 >seq5983 Length=204 Score = 111 bits (122), Expect = 4e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||| || ||||| || |||||| | ||||| || ||||||| Sbjct 69 CAGATCTTTGTAAAGACTCTGACTGGAAAGACCATCACCTTGGAGGTCGAGCCCTCAGAC 128 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || || || |||||||| || |||||||| || |||||||| Sbjct 129 ACCATCGAGAACGTGAAGGCTAAAATCCAGGACAAGGAGGGAATCCCCCCTGACCAGCAG 188 Query 178044 CGACTTATCTTCGCCG 178059 || || ||||| |||| Sbjct 189 CGTCTAATCTTTGCCG 204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1197841770186810