Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Belgica_20antarctica_20[genbank_20GCA_5F000775305.1_202014-09-03] 4,997 sequences; 89,583,723 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq596 156 4e-33 seq496 87.8 2e-12 >seq596 Length=46163 Score = 156 bits (172), Expect = 4e-33 Identities = 399/600 (67%), Gaps = 8/600 (1%) Strand=Plus/Plus Query 16798 ATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAA-GACGTA 16856 ||| || || || || || |||| |||||| | |||||||||| || | | | || | Sbjct 2613 ATCGGCCACGAACTCGATGTATTCAGACATTAGTCCGCAGTTCATGCCGAGCATGTCGCA 2672 Query 16857 CCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAG 16916 | ||||| || || |||| ||| ||| || || || || || || || || | Sbjct 2673 C-GGAAGGGCGTCGGTCAGAAACTCTTGTTCAATCTTTACAGCCTCTGAGATGAT-CTCG 2730 Query 16917 C-AACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCG 16975 ||| ||||||| | || | |||| ||||||| | |||||||| || || || || Sbjct 2731 ATAACGCGTTCCTTTGGTGGCTTCTGTTCAAGATGTCTGAACATCAGGCAAGCAAAGTCA 2790 Query 16976 CAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTT 17035 || || || |||||||| | ||| |||||||| || || || | || |||||| Sbjct 2791 CAGTGCAAGCCCTCGTCACGTGAGATGAGTTCGTTTGAGAAGGTGAGACCTGGCATCAAA 2850 Query 17036 CCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACG 17095 || || ||||| | ||| || || | ||| || || ||||| || || ||||| Sbjct 2851 CCGCGCTTCTTGAGCCAGAAGATTGAGGCAAAGCTTCCGCTGAAGAAAATTCCTTCGACA 2910 Query 17096 GATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGC 17155 | ||||| ||||| | ||||| | | | || | | || | ||||| | | Sbjct 2911 GCAGCAAAGGCGATAATGCGTTCTCCAAAGTTAGCCTTTGTGCTGGCGATCCAGTCCAAG 2970 Query 17156 ACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT--ATGGCCTTAAATAATTTCT 17213 |||| || || |||| ||||| || | | | |||| | ||| || || | | Sbjct 2971 GCCCAGTCAGCCTTTTTCTTTACACA--CGGTAGATTCTCGACGGCGTTGAAAAGGAAGT 3028 Query 17214 CTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTA 17273 | |||| | ||| | || || || || ||||| || |||||| |||||||| | Sbjct 3029 CGCGCTCCTTTGAGTCTCTAATGTAGGTTTCAATGAGAAGCGAGTACATCTCGGAGTGGA 3088 Query 17274 TGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCA 17333 || |||||||| ||||| || || || ||||| ||||| || | | ||| |||||| Sbjct 3089 CATTTTCCATGGCGATCTGGAAGCCATAGAAGCAACGGGCCTCTGTGACTTGCACTTCCT 3148 Query 17334 CGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCA 17393 | ||| ||||| | || || ||||| |||||||||||| || ||||| || |||| Sbjct 3149 GGCTGAACCGTTCAACGAGGTTCTCGTTAACGATGCCGTCGGAAGCTGCGAAGAAGGCCA 3208 >seq496 Length=57215 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 119777 TCGAATTTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTGTCGTGG 119836 ||| | |||||||| | ||||| ||||| || ||||| ||||| | ||||||| Sbjct 40839 TCGTAGTTCATATACCTGATCTTGCCGAATACATCTCGTTCTTTCCAGCCCATGTCGTGA 40780 Query 119837 AGCCCCGCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTAACTCG 119896 | || | | | ||| | |||||| ||||||||||| ||||| ||| || || | | Sbjct 40779 ATTCCTCCAATGCTCCACATGCATCCGACGTATCCGTTTGGATCACGTCCGTCCAAGTTG 40720 Query 119897 TATTTATCGTTTAAGTAGATA-CAGACGCTTAACGCACTT--TCAGGAGTCTCGCTCCAT 119953 || |||||| | ||||||| ||| || | | ||| || || || |||| Sbjct 40719 TAGCGATCGTTGAGGTAGATAGCAGTGGC---AAGAGCTTCATCTGGCGTTGACATCCAC 40663 Query 119954 TCCAGTAtttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTC 120006 || || || || || ||||||||||| || | | | || |||||||| ||||| Sbjct 40662 TCGAGGATCTTCTTGGCCCAGTACATTCGAAGGAAACCGTGCATTTTGCCTTC 40610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517513272807960