Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Belgica_20antarctica_20[genbank_20GCA_5F000775305.1_202014-09-03] 4,997 sequences; 89,583,723 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1280 208 9e-49 seq596 183 4e-41 >seq1280 Length=9399 Score = 208 bits (230), Expect = 9e-49 Identities = 839/1302 (64%), Gaps = 36/1302 (3%) Strand=Plus/Minus Query 53380 CGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAG-CTAGTTCACAACTCGCCTCTA 53438 ||||||| | || || ||||| | || || ||| | | ||||||||||| ||||| | Sbjct 2688 CGATCCTTCGTAGGTTTCGTAAGTACCGAGCT-CTCTGGCGAGTTCACAACTTGCCTCAA 2630 Query 53439 ATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTA- 53497 || ||||| || || || |||||||||| || || || | ||||| | ||| | Sbjct 2629 GCGCGCCGTAGTAGATCGTCTCGAAGATCTGCTGGTTCAGCTTCTGTGCGTTT-GGCGAC 2571 Query 53498 TCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATA 53557 || || |||||| | | || || ||||| || | ||||||| || |||||||| Sbjct 2570 TCGAACGGATAACTCATCGTGATGAAAGCGTCGGCCAGGCCTTGAATGCCGATACCGATC 2511 Query 53558 GGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 53617 || | ||| | | | || || | ||| ||||| || || || || || | ||| || Sbjct 2510 GGGCGATGACGCATGTTCGATCGCTTAGCCTCTGGGATCGGGTAGTAGTTGACATCGATG 2451 Query 53618 ATTTTATTGAGGTT---TCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCA 53674 || || || | ||| | ||||| | ||| || ||||| || || | || || Sbjct 2450 ATCTTGTTCAAGTTCTTTGTGACAGTC---TTGGTGACTTCCTTGAGCTTTTGGAAGTCG 2394 Query 53675 AA----TTGTCC-ATCTATT-ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACG 53728 | ||| | || || ||||||||||| | || || ||||||||||| || ||| Sbjct 2393 TAAGTCTTGGCTGATGCGTTCACAAACATGTTGACAGCGATCGATGCCAGATTGCAGACG 2334 Query 53729 GCTACCTCATTAGCATCC--GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 53786 || || || | | | | | ||| | || || || ||||| | || || | Sbjct 2333 GCGACTTCGTC--CTTGCTGGAATACTCGATGATTTCCGTGCACAAGTTGGAGCAACGAA 2276 Query 53787 TGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 53846 |||| || | || || || || |||| ||| || || ||||| || | ||| | | Sbjct 2275 TGGTGCCGACGTTCTGCTGGTTCGACTTTCGGTTGCAAGCGTCCTTGTACAACATGTAAG 2216 Query 53847 GCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTA 53906 |||| ||||| || | || || || || || || ||| | | | ||||||| || Sbjct 2215 GCGTGCCAGTCTCGACTTGTGACTCGATGATGGCAAACCACAAGTCTTGAGCCTTGATCT 2156 Query 53907 TAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCC 53966 ||| | ||| ||||||| ||||| || ||||| || |||| Sbjct 2155 GGCGGAGGTAACGGCCTTCGGCTTCGTATCTCTCGTACAACTTCTCGAACTCTTCGCCCC 2096 Query 53967 AAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCT 54026 | | || | || ||||| | |||||||||||||||||| |||||| | | Sbjct 2095 ACGAGTCGTAGAGGCCTGGACAGCTGTGCGGACACATCAACGACCAGACTCCGTTG-CTT 2037 Query 54027 TCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTA 54085 ||| | || ||| || | ||| |||||||| | ||| || | || | | | | Sbjct 2036 TCAACGCGACGCATGAACAAATCGGGAATCCACAAAGCGTAGAACATGTCACGAGCACGA 1977 Query 54086 TGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCAC 54145 ||| || || || || || || || |||||||||||| | | | || |||||| Sbjct 1976 ACTTCTTCTTTGCCAGTGTTTTTCTTGAGATCGAGGAACTCGAAGACGTCGCCGTGCCAC 1917 Query 54146 GGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTA 54205 || || | || || | | | | || || || |||||||| || || |||| || | | Sbjct 1916 GGCTCGAGATAAATTGCGAAAGCACCTGGTCGCTTGTTTCCGCCTTGGTCTACATAGCGA 1857 Query 54206 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCG 54265 |||||||| || ||||| | ||||||||||| || || || || || ||||| ||| Sbjct 1856 GCGGTGTTGTTGTAAACACGCAACATTGGAACAAGTCCGTTTGAGATCCCGTTGGTGCCG 1797 Query 54266 GAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCA 54323 | |||||| |||| |||| ||||| | | | ||| | ||| || || || ||| Sbjct 1796 GCGATATACGTTCCCTTGGCGCGAATACAGTGCACGTTG--ACACCGATACCGCCAGCCG 1739 Query 54324 TTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCA 54383 || ||| || |||||| |||| | |||||| || ||||| || || ||||| Sbjct 1738 ACTTGCTGATCAAAGCGCATTGTTTCAGCGTATCGTAAATGCCGTCAATTGAGTCATCGG 1679 Query 54384 TCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAG 54442 ||| | || || ||||| || | || | ||| || | || || | Sbjct 1678 ACATCGACAACAAG-AAACACGACGAAAGCTGCGGGCGAGGCGTAGCGGCGGCGAAGAGA 1620 Query 54443 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAG 54502 || || || || || || || | |||||| | || ||||| ||||| || || ||| Sbjct 1619 GTTGGCGAGGCATGGGTGAAGTAGCGTTCAGACAAAAGGTTGTAAGTCTCAATGGCCGAG 1560 Query 54503 TCTATATC----CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCT 54558 || || || |||| |||| || || || || | ||| | |||||| || || | Sbjct 1559 TCGATGTCTTCACCATGGATG----CCCACGGCAACTCTCATGAGCATGTGTTGCGGGCG 1504 Query 54559 TTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 54618 || |||||||| || | |||||||||||| |||||||| || || || || Sbjct 1503 CTCGGCGATCTTGCCTTTGTTCTTCAGCAAGTAGCTGCGCTCCAAAGTCTTGAATCCGAA 1444 Query 54619 ATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTT 54660 || ||||| ||||| || ||||| || || | ||||| Sbjct 1443 GTAATTGTAGCCGAAGTCGCGGTCGTAGATGATGGCAGAGTT 1402 >seq596 Length=46163 Score = 183 bits (202), Expect = 4e-41 Identities = 546/834 (65%), Gaps = 19/834 (2%) Strand=Plus/Plus Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903 ||||||||||| ||||| || ||||| ||||| || || || || | || || | Sbjct 2488 TTTTGGTATTCTCCCACTTTCTTCTCGAAGAAATTCGTCTTTCCCTCGAGCGAGATCGAT 2547 Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATC 23963 |||||||| | | ||||| | ||| ||||| || || ||| | || || | Sbjct 2548 TCCATGAAGGAGAAGGGATTTTTGGTATTGTAGATCTTTCCAACTCCAAGCTCGGACAGA 2607 Query 23964 AATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAA-G 24022 | | ||| || || ||||| || ||| ||| | | | || ||||| || | | | Sbjct 2608 AGACGATCGGCCACGAACTCGATGTATTCAGACATTAGTCCGCAGTTCATGCCGAGCATG 2667 Query 24023 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 24082 | || ||||| || | || ||||| ||||||||||| || || |||| || || Sbjct 2668 TCGCAC-GGAAGGGCGTCGGTCAGAAACTCTTGTTCAATCTTTACAGCCTCTGAGATGAT 2726 Query 24083 AGATCTTACTGTTTCTTCACTCGGTGGATACAAT---AAATGTTTAAACATCAAACATGC 24139 | || ||| | | ||||| | | | | |||| | ||||||| || || Sbjct 2727 CTCGATAACGCGTTCCT---TTGGTGGCTTCTGTTCAAGATGTCTGAACATCAGGCAAGC 2783 Query 24140 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 24199 || || ||||| | |||||||| | || | |||||| || || ||||| || || Sbjct 2784 AAAGTCACAGTGCAAGCCCTCGTCACGTGAGATGAGTTCGTTTGAGAAGGTGAGACCTGG 2843 Query 24200 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCC 24259 ||| | || ||||| || ||||| || || || ||||| ||| ||||||||||| Sbjct 2844 CATCAAACCGCGCTTCTTGAGCCAGAAGATTGAGGCAAAGCTTCCGCTGAAGAAAATTCC 2903 Query 24260 TTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCA----TAACC--GGCGCTGTCATGTAT 24313 ||| || || |||||||| |||| | ||||||| || || | |||| | || Sbjct 2904 TTCGACAGCAGCAAAGGCGATAATGCGTTCTCCAAAGTTAGCCTTTGTGCTGGC---GAT 2960 Query 24314 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 24373 ||| | ||||| || ||||| || |||||||| || | |||| | || || || Sbjct 2961 CCAGTCCAAGGCCCAGTCAGCCTTTTTCTTTACACACGGTAGATTCTCGACGGCGTTGAA 3020 Query 24374 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 24433 || ||| || || ||| ||| || || ||||| | ||| ||||| || Sbjct 3021 AAGGAAGTCGCGCTCCTTTGAGTCTCTAATGTAGGTTTCAATGAGAAGCGAGTACATCTC 3080 Query 24434 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 24493 || || | ||||| ||||| || || || || ||||| || | ||||| || | || Sbjct 3081 GGAGTGGACATTTTCCATGGCGATCTGGAAGCCATAGAAGCAACGGGCCTCTGTGACTTG 3140 Query 24494 TACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 24553 ||||| | || ||||| | | || || || || || ||||| ||||| || Sbjct 3141 CACTTCCTGGCTGAACCGTTCAACGAGGTTCTCGTTAACGATGCCGTCGGAAGCTGCGAA 3200 Query 24554 AAACGCCAATACATGTTTTATAAAAT-ATTTTTCGTCTGGTGTTAGTTTATTCCAATCAT 24612 || |||| ||||| ||||||| | | || | | | | || ||||| || | Sbjct 3201 GAAGGCCAGAACATGGGAGATAAAATGACGCTCGGTGTCCT-TCAAGTTGTTCCAGTCGT 3259 Query 24613 TGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666 | || || || || | ||| ||||||||||||||||||||||| || || |||| Sbjct 3260 TCATGTCCTTTGACAAATCGACTTCTTCCACTGTCCAAAATGAAGCTTCAGCCT 3313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593684514664560