Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Belgica_20antarctica_20[genbank_20GCA_5F000775305.1_202014-09-03] 4,997 sequences; 89,583,723 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq596 333 3e-86 seq108 136 4e-27 seq29 122 9e-23 seq1975 82.4 8e-11 >seq596 Length=46163 Score = 333 bits (368), Expect = 3e-86 Identities = 515/726 (71%), Gaps = 16/726 (2%) Strand=Plus/Minus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||| || || || || ||||| || || || || || |||| ||||||| || ||||| Sbjct 3313 AGGCTGAAGCTTCATTTTGGACAGTGGAAGAAGTCGATTTGTCAAAGGACATGAACGACT 3254 Query 116715 GGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCG 116774 || | |||||| |||| |||||| ||||| ||| || || |||||||| ||||| | Sbjct 3253 GGAACAACTTGAAGGACACCGAGCGTCATTTTATCTCCCATGTTCTGGCCTTCTTCGCAG 3194 Query 116775 CCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGG 116834 | |||||||||||| |||||||| || || || || ||| ||||| ||||| || Sbjct 3193 CTTCCGACGGCATCGTTAACGAGAACCTCGTTGAACGGTTCAGCCAGGAAGTGCAAGTCA 3134 Query 116835 CCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGT 116894 | ||||| || |||||||| ||||| |||||||||||||| || || ||||| || |||| Sbjct 3133 CAGAGGCCCGTTGCTTCTATGGCTTCCAGATCGCCATGGAAAATGTCCACTCCGAGATGT 3074 Query 116895 ATTCGACCCTCATCGACACGTACGTGCG---CTCTTCGGAG-GAGAAGCTCCGTTTGTTG 116950 | ||| ||||| || || ||| | | ||| |||| | || || | || || Sbjct 3073 ACTCGCTTCTCATTGAAACCTACATTAGAGACTCAAAGGAGCGCGA--CTTCCTT--TTC 3018 Query 116951 AACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATC 117010 |||||| |||||| | ||||| || || | ||||| || ||||| || ||||||| Sbjct 3017 AACGCCGTCGAGAATCTACCGTGTGTAAAGAAAAAGGCTGACTGGGCCTTGGACTGGATC 2958 Query 117011 GCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTC 117070 ||| ||| | |||| ||| || || ||| | | ||||| || || ||||| || | Sbjct 2957 GCCAGCACAAAGGCTAACTTTGGAGAACGCATTATCGCCTTTGCTGCTGTCGAAGGAATT 2898 Query 117071 TTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGC 117130 ||||| || || || ||| | || || ||||||||||| ||||| | ||||| || Sbjct 2897 TTCTTCAGCGGAAGCTTTGCCTCAATCTTCTGGCTCAAGAAGCGCGGTTTGATGCCAGGT 2838 Query 117131 CTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGT 117190 || || ||| ||||| |||||||| | |||||||| |||| || |||||||| || Sbjct 2837 CTCACCTTCTCAAACGAACTCATCTCACGTGACGAGGGCTTGCACTGTGACTTTGCTTGC 2778 Query 117191 TTGCTGTTCAAGCAT-TTG--GTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTC 117247 || |||||| ||| ||| | ||| ||| | || ||||| | |||||| || Sbjct 2777 CTGATGTTCAGACATCTTGAACAGAAGCCACCAA---AGGAACGCGTTATCGAGATCATC 2721 Query 117248 ACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTC-TGCT 117306 | || || || || || || || || ||||| || || || ||||| | |||| Sbjct 2720 TCAGAGGCTGTAAAGATTGAACAAGAGTTTCTGACCGACGCCCTTCC-GTGCGACATGCT 2662 Query 117307 GGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCT 117366 || | || |||| | ||||| |||||||||||||||| ||||| | || ||| Sbjct 2661 CGGCATGAACTGCGGACTAATGTCTGAATACATCGAGTTCGTGGCCGATCGTCTTCTGTC 2602 Query 117367 CGAGCT 117372 |||||| Sbjct 2601 CGAGCT 2596 >seq108 Length=162490 Score = 136 bits (150), Expect = 4e-27 Identities = 156/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || |||||||| ||||| ||||| ||||| ||||| ||||||||| |||| ||||| ||| Sbjct 112066 AAGATGCAAATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCCTCGAGGTCGA-GCC 112008 Query 40747 ACCG-ACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | || ||| | ||| |||||| || || | ||||| || ||||| || | || Sbjct 112007 ATCGGACACAATTGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCAGA 111948 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| || || |||| ||| ||||| ||||| || |||| ||||| | | |||||| Sbjct 111947 TCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAAGACGGTCGCACATTGAGCGACTA 111888 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCA 40892 |||||| ||||||||| | || || || Sbjct 111887 CAACATTCAGAAGGAGTCGACACTTCA 111861 >seq29 Length=258594 Score = 122 bits (134), Expect = 9e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| | ||||| |||||||| ||| |||| || || |||| | Sbjct 96423 ATGCAAATCTTCGTCAAAACATTGACGGGTAAAACCATTACCCTCGAGGTTGA-GCCATC 96481 Query 40750 G-ACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 | ||| | ||| |||||| || || | |||||||| ||||| ||| | ||||| Sbjct 96482 GGACACTATCGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCA 96541 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||| | |||| ||| || || || |||| || | || || || | ||||||||| Sbjct 96542 GCAGCGATTGATCTTCGCCGGAAAGCAATTGGAAGATGGACGTACTCTGAGCGACTACAA 96601 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||| |||||| | || || || Sbjct 96602 CATCCAAAAGGAGTCGACACTTCA 96625 >seq1975 Length=2172 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 40768 AAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCG 40827 |||| ||| || | || || || || |||||| | |||||||| ||| | |||| || Sbjct 2135 AAGGCAAAGATCCAGGATAAGGAAGGAATCCCCCCAGACCAGCAGCGATTGATCTTTGCT 2076 Query 40828 GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACG 40887 || || ||||| || || | |||||| | | |||||||||||||||||| || | || Sbjct 2075 GGAAAGCAGCTCGAAGATGGTCGCACCTTGAGCGACTACAACATCCAGAAAGAATCGACA 2016 Query 40888 CTGCA 40892 ||||| Sbjct 2015 CTGCA 2011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515187018120720