Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Belgica_20antarctica_20[genbank_20GCA_5F000775305.1_202014-09-03] 4,997 sequences; 89,583,723 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1280 203 4e-47 seq596 201 1e-46 >seq1280 Length=9399 Score = 203 bits (224), Expect = 4e-47 Identities = 806/1254 (64%), Gaps = 32/1254 (3%) Strand=Plus/Minus Query 62655 GCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTT 62714 || |||| |||||| ||||| | || ||||| || || || || ||||||| || || Sbjct 2651 GCGAGTTCACAACTTGCCTCAAGCGCGCCGTAGTAGATCGTCTCGAAGATCTGCTGGTTC 2592 Query 62715 AGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAAT 62774 || | ||||| | || || || |||||| | | || || ||||| || | Sbjct 2591 AGCTTCTGTGCGTTTGGCGACTCGAACGGATAACTCATCGTGATGAAAGCGTCGGCCAGG 2532 Query 62775 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 62834 ||||||| || |||||||| || | ||| | | | || || | ||| ||||| || Sbjct 2531 CCTTGAATGCCGATACCGATCGGGCGATGACGCATGTTCGATCGCTTAGCCTCTGGGATC 2472 Query 62835 GGATAATAATTAATATCTATAATTTTATTGAGATT---TCTGACAATTACTTTGACCACA 62891 || || || || | ||| || || || || | || | ||||| | ||| || Sbjct 2471 GGGTAGTAGTTGACATCGATGATCTTGTTCAAGTTCTTTGTGACAGTC---TTGGTGACT 2415 Query 62892 TCCTTCAGTTTGAGAAAATC--AAATC---GCCCATCTATT-ACAAACATGTTCAATGCA 62945 ||||| || || | || || || || || || || ||||||||||| | || Sbjct 2414 TCCTTGAGCTTTTGGAAGTCGTAAGTCTTGGCTGATGCGTTCACAAACATGTTGACAGCG 2355 Query 62946 ACAGATGCCAGATTACACACGGCTACCTCATTAGCATCC--GCATATTGTATTATCTCAG 63003 | ||||||||||| || ||||| || || | | | | | ||| | || || || | Sbjct 2354 ATCGATGCCAGATTGCAGACGGCGACTTCGTC--CTTGCTGGAATACTCGATGATTTCCG 2297 Query 63004 TGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACG 63063 |||| | || || || || || | || || || || |||| ||| || | Sbjct 2296 TGCACAAGTTGGAGCAACGAATGGTGCCGACGTTCTGCTGGTTCGACTTTCGGTTGCAAG 2237 Query 63064 CATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCC 63123 | ||||| || | ||| | || || ||||| || | || || || || || || || Sbjct 2236 CGTCCTTGTACAACATGTAAGGCGTGCCAGTCTCGACTTGTGACTCGATGATGGCAAACC 2177 Query 63124 AGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACA 63183 | | | || ||||||| || ||| | | ||| ||||||| |||| Sbjct 2176 ACAAGTCTTGAGCCTTGATCTGGCGGAGGTAACGGCCTTCGGCTTCGTATCTCTCGTACA 2117 Query 63184 ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCA 63243 | |||||||| || ||||| | || | | ||||| | ||||||||||| Sbjct 2116 ACTTCTCGAACTCTTCGCCCCACGAGTCGTAGAGGCCTGGACAGCTGTGCGGACACATCA 2057 Query 63244 ACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63302 ||||||| |||||| | |||| | || ||| || | ||| |||||||| | ||| Sbjct 2056 ACGACCAGACTCCGTTG-CTTTCAACGCGACGCATGAACAAATCGGGAATCCACAAAGCG 1998 Query 63303 ATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 63362 || | || | | | | ||| || || || || || || || |||||||||||| Sbjct 1997 TAGAACATGTCACGAGCACGAACTTCTTCTTTGCCAGTGTTTTTCTTGAGATCGAGGAAC 1938 Query 63363 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 63422 | | | || |||||||| || | || || || | | | || || || |||||| Sbjct 1937 TCGAAGACGTCGCCGTGCCACGGCTCGAGATAAATTGCGAAAGCACCTGGTCGCTTGTTT 1878 Query 63423 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63482 || || || |||| || | ||||||||| || ||||| | ||||||||||| || ||| Sbjct 1877 CCGCCTTGGTCTACATAGCGAGCGGTGTTGTTGTAAACACGCAACATTGGAACAAGTCCG 1818 Query 63483 TTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT--ATTACTAATTG 63540 ||||| || || ||||| |||| |||||| ||| |||| ||||| | | | ||| Sbjct 1817 TTTGAGATCCCGTTGGTGCCGGCGATATACGTTCCCTTGGCGCGAATACAGTGCACGTTG 1758 Query 63541 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGA 63600 | ||| || || || ||| || ||| || |||||| |||| | ||| || || | Sbjct 1757 --ACACCGATACCGCCAGCCGACTTGCTGATCAAAGCGCATTGTTTCAGCGTATCGTAAA 1700 Query 63601 TGCCTTCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 63659 |||| || || |||||| ||| | || || ||||| || | || | ||| Sbjct 1699 TGCCGTCAATTGAGTCATCGGACATCGACAACAAG-AAACACGACGAAAGCTGCGGGCGA 1641 Query 63660 GTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA 63719 | || | || || | || || || || || || || | |||||| | || Sbjct 1640 GGCGTAGCGGCGGCGAAGAGAGTTGGCGAGGCATGGGTGAAGTAGCGTTCAGACAAAAGG 1581 Query 63720 TTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACG 63775 ||||| |||||||| || ||||| || || |||| |||| || || || || | Sbjct 1580 TTGTAAGTCTCAATGGCCGAGTCGATGTCTTCACCATGGATG----CCCACGGCAACTCT 1525 Query 63776 CATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTT 63835 ||| | |||||| || || | || | || ||| || | |||| ||||||| Sbjct 1524 CATGAGCATGTGTTGCGGGCGCTCGGCGATCTTGCCTTTGTTCTTCAGCAAGTAGCTGCG 1465 Query 63836 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 |||||||| || || || || || ||||| ||||| || ||||| || || Sbjct 1464 CTCCAAAGTCTTGAATCCGAAGTAATTGTAGCCGAAGTCGCGGTCGTAGATGAT 1411 >seq596 Length=46163 Score = 201 bits (222), Expect = 1e-46 Identities = 550/834 (66%), Gaps = 19/834 (2%) Strand=Plus/Plus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 ||||||||||| ||||| || ||||| ||||| || ||||| || | || || | Sbjct 2488 TTTTGGTATTCTCCCACTTTCTTCTCGAAGAAATTCGTCTTTCCCTCGAGCGAGATCGAT 2547 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 |||||||| || ||||| | |||||| || ||| || ||| | || || | Sbjct 2548 TCCATGAAGGAGAAGGGATTTTTGGTATTGTAGATCTTTCCAACTCCAAGCTCGGACAGA 2607 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGA-G 33469 | | ||| || ||||| || || ||| ||| | | | || ||||| || | | | Sbjct 2608 AGACGATCGGCCACGAACTCGATGTATTCAGACATTAGTCCGCAGTTCATGCCGAGCATG 2667 Query 33470 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAAT 33529 | || ||||| || | || ||||| ||||||||||| ||| || | || || || Sbjct 2668 TCGCAC-GGAAGGGCGTCGGTCAGAAACTCTTGTTCAATCTTTACAGCCTCTGAGATGAT 2726 Query 33530 AAATCTAACGGTTTCTTCACTCGGTGGAT---GTAATAAATGTTTAAACATCAAACATGC 33586 ||||| ||| | | ||||| | || | |||| | ||||||| || || Sbjct 2727 CTCGATAACGCGTTCCT---TTGGTGGCTTCTGTTCAAGATGTCTGAACATCAGGCAAGC 2783 Query 33587 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGG 33646 || || ||||||| |||||||| | || | |||||| || || ||||| || || Sbjct 2784 AAAGTCACAGTGCAAGCCCTCGTCACGTGAGATGAGTTCGTTTGAGAAGGTGAGACCTGG 2843 Query 33647 CATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCC 33706 ||| | || ||||| || ||||| || || || || || |||| ||||| ||||| Sbjct 2844 CATCAAACCGCGCTTCTTGAGCCAGAAGATTGAGGCAAAGCTTCCGCTGAAGAAAATTCC 2903 Query 33707 TTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCA----TAACC--GGCGCTGTCATGTAT 33760 ||| || ||||||||||| |||| | |||||| || || | |||| | || Sbjct 2904 TTCGACAGCAGCAAAGGCGATAATGCGTTCTCCAAAGTTAGCCTTTGTGCTGGC---GAT 2960 Query 33761 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33820 ||| | ||||| || ||||| || |||||||| || | | || | ||| || || Sbjct 2961 CCAGTCCAAGGCCCAGTCAGCCTTTTTCTTTACACACGGTAGATTCTCGACGGCGTTGAA 3020 Query 33821 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 33880 || ||| || || ||| ||| || || || || | ||| ||||| || Sbjct 3021 AAGGAAGTCGCGCTCCTTTGAGTCTCTAATGTAGGTTTCAATGAGAAGCGAGTACATCTC 3080 Query 33881 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 33940 || || | ||||| ||||| ||||| || || ||||| || | ||||| || | || Sbjct 3081 GGAGTGGACATTTTCCATGGCGATCTGGAAGCCATAGAAGCAACGGGCCTCTGTGACTTG 3140 Query 33941 CACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAA 34000 |||||| | || ||||| | | || || || || || || || ||||| || Sbjct 3141 CACTTCCTGGCTGAACCGTTCAACGAGGTTCTCGTTAACGATGCCGTCGGAAGCTGCGAA 3200 Query 34001 AAACGCCAATACATGTTTTATAAAAT-ATTTTTCGTCTGGTGTTAGTTTATTCCAATCAT 34059 || |||| ||||| ||||||| | | || | | | | || ||||| || | Sbjct 3201 GAAGGCCAGAACATGGGAGATAAAATGACGCTCGGTGTCCT-TCAAGTTGTTCCAGTCGT 3259 Query 34060 TGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | || || || || | ||| ||||||||||||||||||||||| || || |||| Sbjct 3260 TCATGTCCTTTGACAAATCGACTTCTTCCACTGTCCAAAATGAAGCTTCAGCCT 3313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629778260018160