Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Belgica_20antarctica_20[genbank_20GCA_5F000775305.1_202014-09-03] 4,997 sequences; 89,583,723 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq596 107 4e-18 seq496 96.9 8e-15 seq1975 91.5 3e-13 >seq596 Length=46163 Score = 107 bits (118), Expect = 4e-18 Identities = 360/549 (66%), Gaps = 31/549 (6%) Strand=Plus/Minus Query 268752 AGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATT 268811 |||| | ||||| |||||||| || |||||||| ||| |||| | ||| | | || | Sbjct 3313 AGGCTGAAGCTTCATTTTGGACAGTGGAAGAAGTCGATTTGTCAAAGGACATGAACGACT 3254 Query 268812 GGAAAAATTTAAA----ACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTT 268867 |||| || || || ||| || | ||||| || || |||| || || || Sbjct 3253 GGAACAACTTGAAGGACACC----GAGCGTCATTTTATCTCCCATGTTCTGGCCTTCTTC 3198 Query 268868 GCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAG 268927 |||| | || || ||||||||||| || || || || |||| | || || || || Sbjct 3197 GCAGCTTCCGACGGCATCGTTAACGAGAACCTCGTTGAACGGTTCAGCCAGGAAGTGCAA 3138 Query 268928 ATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAG 268987 | | || ||| | || || || || |||||||| || || |||||| | || || ||| Sbjct 3137 GTCACAGAGGCCCGTTGCTTCTATGGCTTCCAGATCGCCATGGAAAATGTCCACTCCGAG 3078 Query 268988 ATGTACAGTCTATTAATAGATACTTATA-TAGATGATAACAACGAAAAGAAAAGACT--A 269044 |||||| || | || || || || | |||| || ||| | | | |||| Sbjct 3077 ATGTACTCGCTTCTCATTGAAACCTACATTAGA-GA-CTCAAAGGAGCG---CGACTTCC 3023 Query 269045 TTTT---CTTCTATGAGAA-CTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAA 269100 |||| | | ||||| ||| | ||||| | ||||| |||| ||||| || | Sbjct 3022 TTTTCAACGCCGTCGAGAATCTACCG--TGTGTAAAGAAAAAGGCTGACTGGGCCTTGGA 2965 Query 269101 ATGGATAAACGATAGCGC---GCCTTAC---GGAGAAAGGTTAGTTGCTTTTGCCGCTGT 269154 ||||| || ||| | | || || |||||| | | | || ||||| ||||| Sbjct 2964 CTGGAT---CGCCAGCACAAAGGCTAACTTTGGAGAACGCATTATCGCCTTTGCTGCTGT 2908 Query 269155 AGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCT 269214 ||||| || ||||| || |||||| | ||||| ||| | ||||| | || | Sbjct 2907 CGAAGGAATTTTCTTCAGCGGAAGCTTTGCCTCAATCTTCTGGCTCAAGAAGCGCGGTTT 2848 Query 269215 TATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGA 269274 |||||||| | || ||||| |||||| | || | ||||| || || ||||| || Sbjct 2847 GATGCCAGGTCTCACCTTCTCAAACGAACTCATCTCACGTGACGAGGGCTTGCACTGTGA 2788 Query 269275 CTTCGCTTG 269283 ||| ||||| Sbjct 2787 CTTTGCTTG 2779 >seq496 Length=57215 Score = 96.9 bits (106), Expect = 8e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 238625 AGGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAG 238684 |||||||||||| ||||| | |||||||| ||||| || ||||| || || |||| Sbjct 40612 AGGCAAAATGCACGGTTTCCTTCGAATGTACTGGGCCAAGAAGATCCTCGAGTGGATGTC 40671 Query 238685 ATCTCCAAAGGAAGCTCTTAGATATAGTATTTATCTGAACGATAAATACGAACTCGACGG 238744 | | ||| | ||||||||| | ||| || || |||||| ||| | | ||||| Sbjct 40672 AACGCCAGATGAAGCTCTTGCCACTGCTATCTACCTCAACGATCGCTACAACTTGGACGG 40731 Query 238745 TACG-GATCCTAACGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACACGATAGGG 238803 ||| ||||| ||||||||||| || || |||||| || | ||| | ||||| | || Sbjct 40732 -ACGTGATCCAAACGGATACGTCGGATGCATGTGGAGCATTGGAGGAATTCACGACATGG 40790 Query 238804 CATGGTCTGAGAGACCTATATTTGGAAAAGTTAGATACATGAATTATGAAGG 238855 ||| || || | |||| || || | || || ||||| || ||||| Sbjct 40791 GCTGGAAAGAACGAGATGTATTCGGCAAGATCAGGTATATGAACTACGAAGG 40842 >seq1975 Length=2172 Score = 91.5 bits (100), Expect = 3e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || | || | ||| || | || | ||| ||||||||||| || || ||||| Sbjct 1985 TTCCTCCACGGAGACGAAGAACCAAGTGCAGTGTCGATTCTTTCTGGATGTTGTAGTCGC 2044 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 | || | ||| ||||| || || ||||||||||| || | | ||| || || || | Sbjct 2045 TCAAGGTGCGACCATCTTCGAGCTGCTTTCCAGCAAAGATCAATCGCTGCTGGTCTGGGG 2104 Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTC 104490 | |||||||| |||||||| |||||||| || || || || Sbjct 2105 GGATTCCTTCCTTATCCTGGATCTTTGCCTTAACGTTCTC 2144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151324682796876