Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Belgica_20antarctica_20[genbank_20GCA_5F000775305.1_202014-09-03] 4,997 sequences; 89,583,723 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq564 125 6e-24 >seq564 Length=50347 Score = 125 bits (138), Expect = 6e-24 Identities = 179/250 (72%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 5249 CCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCTCTTGAACTGCTGGG 5308 ||||||||| | |||||| | ||||||| |||| || || |||| ||| | ||| Sbjct 9827 CCGAATCCACCGGTGCCGCGTTTGGTGTCGCTCAAGTCCTTGACTTCTTCAACCACCGGG 9886 Query 5309 TGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCG 5368 | | ||||| |||||||| || ||||| || | ||| ||||| | |||| || Sbjct 9887 TAGAAGATGCGCTCGCATATCAGTTGAGCGATGCGGTCGCCCTTGGCGATAGCAAACTCA 9946 Query 5369 CTGTTTCCGAAG--TTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAA 5426 || |||| || |||| || || || || || || |||||||||||||| || | Sbjct 9947 ACGT--CCGAGTGATTGAACAAGACGACACCAACGTTTCCGCGGTAGTCTTCGTCAATGA 10004 Query 5427 CGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTC 5486 |||| ||||| || |||||||||| ||||| || | ||| |||||||| || | ||| | Sbjct 10005 CGCCGGCGCCGACATCGATAAAGTTCTTGACGGCTAAGCCAGAACGTGGAGCAACGCGGC 10064 Query 5487 CGTAGCAACC 5496 | ||||| || Sbjct 10065 CATAGCAGCC 10074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447722432390640