Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Belgica_20antarctica_20[genbank_20GCA_5F000775305.1_202014-09-03]
4,997 sequences; 89,583,723 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq142 246 2e-60
seq1305 140 2e-28
seq29 120 2e-22
>seq142
Length=140745
Score = 246 bits (272), Expect = 2e-60
Identities = 250/326 (77%), Gaps = 0/326 (0%)
Strand=Plus/Minus
Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221
||||| || ||||||| ||||| || || | ||| || |||||| ||||| |||||
Sbjct 68298 ATGGGTACTTTGAACGTTAATCGCAAAGTCACCGACTTGTACTACCGTTACAAGATGCCA 68239
Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281
|||||| |||||||| || || || |||||||| || || |||||||| |||||||
Sbjct 68238 CGCATCATGGCCAAGGTTGAAGGCAAAGGAAACGGCATCAAGACCGTCATCTCCAACATG 68179
Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341
||||| || ||||| ||| || || | ||||||||||| || | |||||| |||
Sbjct 68178 GGCGAAGTGGCAAAGGCACTCAACCGTCCGCCGACCTACCCGACCAAGTTTTTCGGATGC 68119
Query 6342 GAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCG 6401
||||| ||||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||
Sbjct 68118 GAACTCGGCGCTCAGACCCAGTTCGATCATAAAAACGAGCGCTTCATCGTCAACGGTTCA 68059
Query 6402 CATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGT 6461
|| || | |||| |||| ||||| | ||||| || || ||||| | || |||||
Sbjct 68058 CACGACGCCAGCAAGTTGCAAGACTTGTTGGACGGATTCATCCGCAAATACGTCTTGTGT 67999
Query 6462 CGGGAATGCGATAACCCGGAGACCGA 6487
| |||||| || || || ||||||||
Sbjct 67998 CCGGAATGTGAAAATCCCGAGACCGA 67973
>seq1305
Length=8880
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 5967 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 5908
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 5907 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 5873
Score = 116 bits (128), Expect = 2e-21
Identities = 72/77 (94%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 3646 CTCTCTATTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCAT 3587
Query 20007 GGTAATATTTAGCCTTA 20023
|||||||||||||||||
Sbjct 3586 GGTAATATTTAGCCTTA 3570
>seq29
Length=258594
Score = 120 bits (132), Expect = 2e-22
Identities = 164/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||| | || ||| | ||||| ||||| || ||||||||| || ||||| ||
Sbjct 96650 ACCACCACGCAGACGGAGGACCAAGTGAAGTGTCGACTCCTTTTGGATGTTGTAGTCGCT 96591
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
|| | |||| | || || ||||| |||||||| || || | || || || || | |||
Sbjct 96590 CAGAGTACGTCCATCTTCCAATTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGG 96531
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
| ||||||||||||| || || ||| ||||| | || ||| || |||||
Sbjct 96530 AATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCGATAGTGTCCGATGGCTCAAC 96471
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| | ||||| |||||||||||||| ||||| ||||| || ||||||
Sbjct 96470 CTCGAGGGTAATGGTTTTACCCGTCAATGTTTTGACGAAGATTTGCATG 96422
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334926801401507
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |