Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Belgica_20antarctica_20[genbank_20GCA_5F000775305.1_202014-09-03] 4,997 sequences; 89,583,723 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq142 246 2e-60 seq1305 140 2e-28 seq29 120 2e-22 >seq142 Length=140745 Score = 246 bits (272), Expect = 2e-60 Identities = 250/326 (77%), Gaps = 0/326 (0%) Strand=Plus/Minus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 ||||| || ||||||| ||||| || || | ||| || |||||| ||||| ||||| Sbjct 68298 ATGGGTACTTTGAACGTTAATCGCAAAGTCACCGACTTGTACTACCGTTACAAGATGCCA 68239 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 |||||| |||||||| || || || |||||||| || || |||||||| ||||||| Sbjct 68238 CGCATCATGGCCAAGGTTGAAGGCAAAGGAAACGGCATCAAGACCGTCATCTCCAACATG 68179 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341 ||||| || ||||| ||| || || | ||||||||||| || | |||||| ||| Sbjct 68178 GGCGAAGTGGCAAAGGCACTCAACCGTCCGCCGACCTACCCGACCAAGTTTTTCGGATGC 68119 Query 6342 GAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCG 6401 ||||| ||||||||||| ||||| ||||| |||||||||||||||||||| ||||| || Sbjct 68118 GAACTCGGCGCTCAGACCCAGTTCGATCATAAAAACGAGCGCTTCATCGTCAACGGTTCA 68059 Query 6402 CATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGT 6461 || || | |||| |||| ||||| | ||||| || || ||||| | || ||||| Sbjct 68058 CACGACGCCAGCAAGTTGCAAGACTTGTTGGACGGATTCATCCGCAAATACGTCTTGTGT 67999 Query 6462 CGGGAATGCGATAACCCGGAGACCGA 6487 | |||||| || || || |||||||| Sbjct 67998 CCGGAATGTGAAAATCCCGAGACCGA 67973 >seq1305 Length=8880 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 5967 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 5908 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 5907 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 5873 Score = 116 bits (128), Expect = 2e-21 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 3646 CTCTCTATTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCAT 3587 Query 20007 GGTAATATTTAGCCTTA 20023 ||||||||||||||||| Sbjct 3586 GGTAATATTTAGCCTTA 3570 >seq29 Length=258594 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | || ||| | ||||| ||||| || ||||||||| || ||||| || Sbjct 96650 ACCACCACGCAGACGGAGGACCAAGTGAAGTGTCGACTCCTTTTGGATGTTGTAGTCGCT 96591 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || | |||| | || || ||||| |||||||| || || | || || || || | ||| Sbjct 96590 CAGAGTACGTCCATCTTCCAATTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGG 96531 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||||||||||| || || ||| ||||| | || ||| || ||||| Sbjct 96530 AATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCGATAGTGTCCGATGGCTCAAC 96471 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | ||||| |||||||||||||| ||||| ||||| || |||||| Sbjct 96470 CTCGAGGGTAATGGTTTTACCCGTCAATGTTTTGACGAAGATTTGCATG 96422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334926801401507