Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Belgica_20antarctica_20[genbank_20GCA_5F000775305.1_202014-09-03] 4,997 sequences; 89,583,723 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq222 102 9e-17 seq162 96.9 4e-15 seq108 91.5 2e-13 seq29 82.4 8e-11 >seq222 Length=107969 Score = 102 bits (112), Expect = 9e-17 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 56993 TTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGA 57052 || || |||| |||||| |||| | |||||||||| ||||| || ||||||||||||| Sbjct 9613 TTCTGCAAAAAATTCTCCCCGGCCGGGAATCGAACCCGGGTCTTCCACGTGACAGGCGGA 9672 Query 57053 CATACTCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||||||| Sbjct 9673 GATACTCACCACTATACTACCGAGGA 9698 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | |||| |||| | |||||||||| ||||| || ||||||||||||| |||| Sbjct 10106 AAAAAAATCCTCCCCGGCCGGGAATCGAACCCGGGTCTTCCACGTGACAGGCGGAGATAC 10047 Query 57058 TCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||| Sbjct 10046 TCACCACTATACTACCGAGGA 10026 >seq162 Length=132079 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| |||| | |||||||||| ||||| || ||||||||||||| |||||||||||| Sbjct 3181 TCTCCCCGGCCGGGAATCGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACT 3240 Query 57066 ATACTACCGAGGA 57078 ||||||||||||| Sbjct 3241 ATACTACCGAGGA 3253 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | |||| |||| | |||||||||| ||||| || ||||||||||||| |||| Sbjct 4250 AAAAAAATCCTCCCCGGCCGGGAATCGAACCCGGGTCTTCCACGTGACAGGCGGAGATAC 4191 Query 57058 TCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||| Sbjct 4190 TCACCACTATACTACCGAGGA 4170 >seq108 Length=162490 Score = 91.5 bits (100), Expect = 2e-13 Identities = 150/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| || | ||| |||||| ||||| ||||| || || || || |||| || Sbjct 111855 ACCAAGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGCTCAATGTGCGACCGTCTTCA 111914 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| |||||||| || || |||||||| || | || | || |||||||| | Sbjct 111915 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGG 111974 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGAT---TCCACATCGACCGTGATGGTT 42176 || || |||| | | | ||||| |||| || || |||| |||||||| Sbjct 111975 ATCTTGGCCTTGACATTTTCAATTGTGTC---CGATGGCTCGACCTCGAGGGTGATGGTC 112031 Query 42177 TTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 ||||| || || || || || ||||||||||| || Sbjct 112032 TTGCCGGTGAGGGTTTTCACGAAGATTTGCATCTT 112066 >seq29 Length=258594 Score = 82.4 bits (90), Expect = 8e-11 Identities = 146/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| || | ||| ||||||||| || ||||| || |||||| || | || || Sbjct 96631 ACCAAGTGAAGTGTCGACTCCTTTTGGATGTTGTAGTCGCTCAGAGTACGTCCATCTTCC 96572 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 | ||||| || ||||| || | |||||||||||| | || | || || |||||| | Sbjct 96571 AATTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGG 96512 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGAT---TCCACATCGACCGTGATGGTT 42176 || || |||| | | | ||||| |||| || || |||| || |||||| Sbjct 96511 ATCTTGGCCTTGACATTTTCGATAGTGTC---CGATGGCTCAACCTCGAGGGTAATGGTT 96455 Query 42177 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || ||||| | || || || ||||||||||| Sbjct 96454 TTACCCGTCAATGTTTTGACGAAGATTTGCAT 96423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543178869570480