Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Belgica_20antarctica_20[genbank_20GCA_5F000775305.1_202014-09-03]
4,997 sequences; 89,583,723 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq596 187 3e-42
seq1280 98.7 1e-15
>seq596
Length=46163
Score = 187 bits (206), Expect = 3e-42
Identities = 545/831 (66%), Gaps = 14/831 (2%)
Strand=Plus/Plus
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
||||| ||||| | ||| | || || |||||||| || |||||||| | || || ||
Sbjct 2488 TTTTGGTATTCTCCCACTTTCTTCTCGAAGAAATTCGTCTTTCCCTCGAGCGAGATCGAT 2547
Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789
||||| || || |||||||| ||| || || ||| | ||| | || | ||
Sbjct 2548 TCCATGAAGGAGAAGGGATTTTTGGTATTGTAGATCTTTCCAACTCCAAGCTCGGACAGA 2607
Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849
|| | ||| || || || | || ||| ||| | | || ||||| || | | |
Sbjct 2608 AGACGATCGGCCACGAACTCGATGTATTCAGACATTAGTCCGCAGTTCATGCCGAGCA-T 2666
Query 18850 TTAACA-GGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908
| || || || || || || ||||| |||||||| || ||||| |||||||| || ||
Sbjct 2667 GTCGCACGGAAGGGCGTCGGTCAGAAACTCTTGTTCAATCTTTACAGCCTCTGAGATGAT 2726
Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAG---AAGATGTTTAAACATCAAACATGC 18965
| ||| | ||| || || || | | ||||||| | ||||||| || ||
Sbjct 2727 CTCGATAACGCG---TTCCTTTGGTGGCTTCTGTTCAAGATGTCTGAACATCAGGCAAGC 2783
Query 18966 AAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGG 19025
||| ||||| || | |||||||| | || | ||| || || || || | ||| ||
Sbjct 2784 AAAGTCACAGTGCAAGCCCTCGTCACGTGAGATGAGTTCGTTTGAGAAGGTGAGACCTGG 2843
Query 19026 CATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACC 19085
||||| || | || || | |||||| || || ||||| ||| ||||| || ||
Sbjct 2844 CATCAAACCGCGCTTCTTGAGCCAGAAGATTGAGGCAAAGCTTCCGCTGAAGAAAATTCC 2903
Query 19086 TTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA--ATC 19143
||| || || ||||| || | | | ||||||| | |||| | || | || |||
Sbjct 2904 TTCGACAGCAGCAAAGGCGATAATGCGTTCTCCAAAGTTAGCCT--TTGTGCTGGCGATC 2961
Query 19144 CATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAAT 19203
|| | || ||||| |||||||| || |||||||| || | |||| | | || ||
Sbjct 2962 CAGTCCAAGGCCCAGTCAGCCTTTTTCTTTACACACGGTAGATTCTCGACGGCGTTGAAA 3021
Query 19204 AGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCT 19263
|| | ||||| | || ||| ||| || | || || | | |||||| ||
Sbjct 3022 AGGAAGTCGCGCTCCTTTGAGTCTCTAATGTAGGTTTCAATGAGAAGCGAGTACATCTCG 3081
Query 19264 GAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGT 19323
|| || | |||||| || || ||||| || || || || || | || ||||| | ||
Sbjct 3082 GAGTGGACATTTTCCATGGCGATCTGGAAGCCATAGAAGCAACGGGCCTCTGTGACTTGC 3141
Query 19324 ACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAA 19383
||||| | || | ||| || | || || ||||| || || || |||||| ||
Sbjct 3142 ACTTCCTGGCTGAACCGTTCAACGAGGTTCTCGTTAACGATGCCGTCGGAAGCTGCGAAG 3201
Query 19384 AATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTA-TTCCAATCATT 19442
|| || | ||||| |||||||| || || || | || ||||| || ||
Sbjct 3202 AAGGCCAGAACATGGGAGATAAAATGACGCTCGG-TGTCCTTCAAGTTGTTCCAGTCGTT 3260
Query 19443 AATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493
|| || || || ||||| |||||||| ||||||||||| ||||| || ||
Sbjct 3261 CATGTCCTTTGACAAATCGACTTCTTCCACTGTCCAAAATGAAGCTTCAGC 3311
>seq1280
Length=9399
Score = 98.7 bits (108), Expect = 1e-15
Identities = 192/284 (68%), Gaps = 0/284 (0%)
Strand=Plus/Minus
Query 48171 GGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATC 48230
||||||||||| ||||| | | | ||| || | | ||| || | ||| || |||
Sbjct 2066 GGACACATCAACGACCAGACTCCGTTGCTTTCAACGCGACGCATGAACAAATCGGGAATC 2007
Query 48231 CAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGT 48290
|| | ||| || | || | || | | |||||| |||||| | || | || ||
Sbjct 2006 CACAAAGCGTAGAACATGTCACGAGCACGAACTTCTTCTTTGCCAGTGTTTTTCTTGAGA 1947
Query 48291 TCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGT 48350
|| || || || | | || | ||||| || || | ||| ||||| | ||||||||
Sbjct 1946 TCGAGGAACTCGAAGACGTCGCCGTGCCACGGCTCGAGATAAATTGCGAAAGCACCTGGT 1887
Query 48351 CGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGG 48410
|| || || || ||||| |||| ||| | || || ||||| ||||| | ||||||||
Sbjct 1886 CGCTTGTTTCCGCCTTGGTCTACATAGCGAGCGGTGTTGTTGTAAACACGCAACATTGGA 1827
Query 48411 ACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCC 48454
|||| || ||||| || || ||||| || | ||||| ||||
Sbjct 1826 ACAAGTCCGTTTGAGATCCCGTTGGTGCCGGCGATATACGTTCC 1783
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562073689279080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |