Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Belgica_20antarctica_20[genbank_20GCA_5F000775305.1_202014-09-03] 4,997 sequences; 89,583,723 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq596 187 3e-42 seq1280 98.7 1e-15 >seq596 Length=46163 Score = 187 bits (206), Expect = 3e-42 Identities = 545/831 (66%), Gaps = 14/831 (2%) Strand=Plus/Plus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 ||||| ||||| | ||| | || || |||||||| || |||||||| | || || || Sbjct 2488 TTTTGGTATTCTCCCACTTTCTTCTCGAAGAAATTCGTCTTTCCCTCGAGCGAGATCGAT 2547 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| || || |||||||| ||| || || ||| | ||| | || | || Sbjct 2548 TCCATGAAGGAGAAGGGATTTTTGGTATTGTAGATCTTTCCAACTCCAAGCTCGGACAGA 2607 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 || | ||| || || || | || ||| ||| | | || ||||| || | | | Sbjct 2608 AGACGATCGGCCACGAACTCGATGTATTCAGACATTAGTCCGCAGTTCATGCCGAGCA-T 2666 Query 18850 TTAACA-GGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 | || || || || || || ||||| |||||||| || ||||| |||||||| || || Sbjct 2667 GTCGCACGGAAGGGCGTCGGTCAGAAACTCTTGTTCAATCTTTACAGCCTCTGAGATGAT 2726 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAG---AAGATGTTTAAACATCAAACATGC 18965 | ||| | ||| || || || | | ||||||| | ||||||| || || Sbjct 2727 CTCGATAACGCG---TTCCTTTGGTGGCTTCTGTTCAAGATGTCTGAACATCAGGCAAGC 2783 Query 18966 AAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGG 19025 ||| ||||| || | |||||||| | || | ||| || || || || | ||| || Sbjct 2784 AAAGTCACAGTGCAAGCCCTCGTCACGTGAGATGAGTTCGTTTGAGAAGGTGAGACCTGG 2843 Query 19026 CATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACC 19085 ||||| || | || || | |||||| || || ||||| ||| ||||| || || Sbjct 2844 CATCAAACCGCGCTTCTTGAGCCAGAAGATTGAGGCAAAGCTTCCGCTGAAGAAAATTCC 2903 Query 19086 TTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA--ATC 19143 ||| || || ||||| || | | | ||||||| | |||| | || | || ||| Sbjct 2904 TTCGACAGCAGCAAAGGCGATAATGCGTTCTCCAAAGTTAGCCT--TTGTGCTGGCGATC 2961 Query 19144 CATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAAT 19203 || | || ||||| |||||||| || |||||||| || | |||| | | || || Sbjct 2962 CAGTCCAAGGCCCAGTCAGCCTTTTTCTTTACACACGGTAGATTCTCGACGGCGTTGAAA 3021 Query 19204 AGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCT 19263 || | ||||| | || ||| ||| || | || || | | |||||| || Sbjct 3022 AGGAAGTCGCGCTCCTTTGAGTCTCTAATGTAGGTTTCAATGAGAAGCGAGTACATCTCG 3081 Query 19264 GAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGT 19323 || || | |||||| || || ||||| || || || || || | || ||||| | || Sbjct 3082 GAGTGGACATTTTCCATGGCGATCTGGAAGCCATAGAAGCAACGGGCCTCTGTGACTTGC 3141 Query 19324 ACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAA 19383 ||||| | || | ||| || | || || ||||| || || || |||||| || Sbjct 3142 ACTTCCTGGCTGAACCGTTCAACGAGGTTCTCGTTAACGATGCCGTCGGAAGCTGCGAAG 3201 Query 19384 AATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTA-TTCCAATCATT 19442 || || | ||||| |||||||| || || || | || ||||| || || Sbjct 3202 AAGGCCAGAACATGGGAGATAAAATGACGCTCGG-TGTCCTTCAAGTTGTTCCAGTCGTT 3260 Query 19443 AATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493 || || || || ||||| |||||||| ||||||||||| ||||| || || Sbjct 3261 CATGTCCTTTGACAAATCGACTTCTTCCACTGTCCAAAATGAAGCTTCAGC 3311 >seq1280 Length=9399 Score = 98.7 bits (108), Expect = 1e-15 Identities = 192/284 (68%), Gaps = 0/284 (0%) Strand=Plus/Minus Query 48171 GGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATC 48230 ||||||||||| ||||| | | | ||| || | | ||| || | ||| || ||| Sbjct 2066 GGACACATCAACGACCAGACTCCGTTGCTTTCAACGCGACGCATGAACAAATCGGGAATC 2007 Query 48231 CAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGT 48290 || | ||| || | || | || | | |||||| |||||| | || | || || Sbjct 2006 CACAAAGCGTAGAACATGTCACGAGCACGAACTTCTTCTTTGCCAGTGTTTTTCTTGAGA 1947 Query 48291 TCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGT 48350 || || || || | | || | ||||| || || | ||| ||||| | |||||||| Sbjct 1946 TCGAGGAACTCGAAGACGTCGCCGTGCCACGGCTCGAGATAAATTGCGAAAGCACCTGGT 1887 Query 48351 CGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGG 48410 || || || || ||||| |||| ||| | || || ||||| ||||| | |||||||| Sbjct 1886 CGCTTGTTTCCGCCTTGGTCTACATAGCGAGCGGTGTTGTTGTAAACACGCAACATTGGA 1827 Query 48411 ACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCC 48454 |||| || ||||| || || ||||| || | ||||| |||| Sbjct 1826 ACAAGTCCGTTTGAGATCCCGTTGGTGCCGGCGATATACGTTCC 1783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562073689279080