Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Belgica_20antarctica_20[genbank_20GCA_5F000775305.1_202014-09-03] 4,997 sequences; 89,583,723 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq108 120 6e-22 seq1975 118 2e-21 seq496 109 1e-18 seq1542 87.8 4e-12 >seq108 Length=162490 Score = 120 bits (132), Expect = 6e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| ||||| || || || || ||||| || || || || Sbjct 111835 TACCACCACGAAGACGGAGAACCAAGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGC 111894 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | ||||||||| || || || ||||| ||||| || | || |||||||||| Sbjct 111895 TCAATGTGCGACCGTCTTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAG 111954 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| ||||| || || ||||||||||| || || || || | Sbjct 111955 GAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATTGTGTCCGATGGCTCGA 112014 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || |||||||| || | || || || || || ||||| Sbjct 112015 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 112063 >seq1975 Length=2172 Score = 118 bits (130), Expect = 2e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| ||||| |||||||| || ||||||||||| || || || || Sbjct 1987 CCTCCACGGAGACGAAGAACCAAGTGCAGTGTCGATTCTTTCTGGATGTTGTAGTCGCTC 2046 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||| ||||| || || |||||||||||||| | || || || ||||| || Sbjct 2047 AAGGTGCGACCATCTTCGAGCTGCTTTCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGG 2106 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||||||||| || |||||||| || || || ||||| | || || || ||| Sbjct 2107 ATTCCTTCCTTATCCTGGATCTTTGCCTTAACGTTCTCAATGGAGTCTGATGGCTCGACT 2166 Query 82764 TCCAA 82768 ||||| Sbjct 2167 TCCAA 2171 >seq496 Length=57215 Score = 109 bits (120), Expect = 1e-18 Identities = 184/264 (70%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 198342 TGGAATGCATCGCAAATACAGATGATAAGAGAAGGAAAAATGCATAGTTTTTTAAGAATG 198401 |||||||| | |||| ||| || | |||||| |||||||| |||| | ||||| Sbjct 40580 TGGAATGCCGCTCAAAACCAGTTGCGCAAAGAAGGCAAAATGCACGGTTTCCTTCGAATG 40639 Query 198402 TACTGGGCTAAAAAGATACTTGAATGGACAAGAACACCGGAAGACGCTTTGAGTTATAGT 198461 |||||||| || ||||| || || |||| ||| || || || ||| | | | Sbjct 40640 TACTGGGCCAAGAAGATCCTCGAGTGGATGTCAACGCCAGATGAAGCTCTTGCCACTGCT 40699 Query 198462 ATCTATCTAAACAATAAGTACGAACTAGACGGCACG-GATCCTAACGGATACGTAGGTTG 198520 ||||| || ||| || ||| | | ||||| ||| ||||| ||||||||||| || || Sbjct 40700 ATCTACCTCAACGATCGCTACAACTTGGACGG-ACGTGATCCAAACGGATACGTCGGATG 40758 Query 198521 TATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAAAGACCTATATTTGGGAA 198580 |||||| ||| | ||| | || || | ||||||||| || | |||| || || Sbjct 40759 CATGTGGAGCATTGGAGGAATTCACGACATGGGCTGGAAAGAACGAGATGTATTCGGCAA 40818 Query 198581 GATAAGATATATGAATTATGAGGG 198604 ||| || |||||||| || || || Sbjct 40819 GATCAGGTATATGAACTACGAAGG 40842 >seq1542 Length=4837 Score = 87.8 bits (96), Expect = 4e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 || || ||||| || ||||||||||| || || |||||||| || ||||||||||| | Sbjct 11 TGCTGGTCTGGGGGGATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATGGAG 70 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 || || || || || | ||| || ||||| || ||||| ||||| || || || ||| Sbjct 71 TCGGAGGGCTCAACCTCGAGAGTGATGGTCTTTCCGGTCAATGTCTTGACGAAGATTTGC 130 Query 82809 ATTATTATATT 82819 ||| | | ||| Sbjct 131 ATTCTAAAATT 141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981764339433983