Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Belgica_20antarctica_20[genbank_20GCA_5F000775305.1_202014-09-03] 4,997 sequences; 89,583,723 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1280 178 1e-39 seq426 118 1e-21 >seq1280 Length=9399 Score = 178 bits (196), Expect = 1e-39 Identities = 505/759 (67%), Gaps = 14/759 (2%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTAC-ACGCGTGTCCGTGAGACGTAC 53251 ||||| | || ||| |||| ||||| ||||| ||| | || || | | |||||| ||| Sbjct 1520 TCATGAGAGTTGCCGTGGGCATCCATGGTGAAGACATCGACTCG-GCCATTGAGACTTAC 1578 Query 53252 GACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 || | || || ||||| || || ||| ||||||| || ||| ||| | |||| Sbjct 1579 AACCTTTTGTCTGAACGCTACTTCACCCATGCCTCGCCAACTCTCTTCGCCGCCGCTACG 1638 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 || ||| ||| | ||| || ||| || || ||||| |||||||| || |||||| Sbjct 1639 CCTCGCCCGCAGCTTTCGTCGTGTTTCTTGTTGTCGATGTCCGATGACTCAATTGACGGC 1698 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 || ||||| ||||| || | || || ||| ||||| | | || ||||||||| || Sbjct 1699 ATTTACGATACGCTGAAACAATGCGCTTTGATCAGCAAGTCGGCTGGCGGTATCGGTGTC 1758 Query 53432 CAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCG 53489 || ||| | | | | || || || || || ||| || || ||||| || | Sbjct 1759 AACGTGCACTGTA--TTCGCGCCAAGGGAACGTATATCGCCGGCACCAACGGGATCTCAA 1816 Query 53490 ATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTG 53549 | ||| | || || ||| | || || | ||||||||| || || || || |||| || | Sbjct 1817 ACGGACTTGTTCCAATGTTGCGTGTTTACAACAACACCGCTCGCTATGTAGACCAAGGCG 1876 Query 53550 GTGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATG 53608 | ||||| | ||| | | ||||| || || |||||||||||||||| |||| | | Sbjct 1877 GAAACAAGCGACCAGGTG-CTTTCGCAATTTATCTCGAGCCGTGGCACGGCGACGTCTTC 1935 Query 53609 GAGTTTCTCGAGCTGCGTCTGAATCA-GGGTGACGAAGAGATGCGCTGC-CGTGACCTGT 53666 ||||| ||||| || | || || || | ||||| | || ||| |||||| ||| Sbjct 1936 GAGTTCCTCGATCT-CAAGAAAAACACTGGCAAAGAAGAAGTTCG-TGCTCGTGACATGT 1993 Query 53667 T-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGG 53725 | ||| ||| |||||||||| || | ||||||| || || | ||| | ||| Sbjct 1994 TCTAC-GCTTTGTGGATTCCCGATTTGTTCATGCGTCGCGTTGAAAGCAACGGAGTCTGG 2052 Query 53726 TACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAAC 53785 | ||||||| ||| || || || |||||| | | | || || ||||| | Sbjct 2053 TCGTTGATGTGTCCGCACAGCTGTCCAGGCCTCTACGACTCGTGGGGCGAAGAGTTCGAG 2112 Query 53786 GAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAG 53845 || |||| || |||| || | ||||| ||| || ||||||| | || Sbjct 2113 AAGTTGTACGAGAGATACGAAGCCGAAGGCCGTTACCTCCGCCAGATCAAGGCTCAAGAC 2172 Query 53846 GTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAG 53905 | ||| ||| ||| || || || || ||||| || ||||| ||||||| |||||| Sbjct 2173 TTGTGGTTTGCCATCATCGAGTCACAAGTCGAGACTGGCACGCCTTACATGTTGTACAAG 2232 Query 53906 GATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGC 53944 || | |||| ||| |||||| ||||| ||||| Sbjct 2233 GACGCTTGCAACCGAAAGTCGAACCAGCAGAACGTCGGC 2271 Score = 96.9 bits (106), Expect = 4e-15 Identities = 301/453 (66%), Gaps = 21/453 (5%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 ||||| || || ||| | || |||||||| || || ||||| || ||||| | |||||| Sbjct 2791 CGCAATTCACTTCTCCTCGCTCCAATGCCGACTGCTTCGACTGCACAGATTCTCGGCAAC 2850 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCT-AGCAGGTGA 55602 ||||| |||||||||||||| | |||| ||||| ||||| || || ||| || || Sbjct 2851 AACGAAAGCTTCGAGCCGTACACCAGCAACGTCTACAACCGCCGCACGCTGAGC-GGAGA 2909 Query 55603 GTTTGTCATGATCAACAAGCACCTCGTCAAGGACCT----GCAGAAGATCAACAAGTGGA 55658 ||| || |||| | || ||| ||||||| || | | ||||| ||| Sbjct 2910 ATTTCAGATCGTCAATCACCATCTCATCAAGGATCTCACCGAACGAGATC----TCTGGG 2965 Query 55659 ACCCGCAGATCAAG-ACG-GAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGGAGA 55715 || | || ||| ||| ||| || | | ||| || || || ||||| | |||| Sbjct 2966 ACGACGACATGAAGAACGAGATCATCGCTAGCAAC---GGATCAGTTCAGAACATCGAGA 3022 Query 55716 --TTCCTCTGCGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTC 55772 ||| | || | || ||| | ||| ||| || |||||||| || |||| | Sbjct 3023 AGATCCCCGCCGACATCCGCGAGTTGTACAAGACCGTCTGGGAGATGTCAGTCAAGACGC 3082 Query 55773 TGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCT 55832 ||| | ||| || ||||| ||||||| |||||| ||||| ||||| | ||| | Sbjct 3083 AGATCCAGATGGCAGCCGATCGCGGTGCGTTCATCGATCAGTCGCAGTCATTCAACGTGC 3142 Query 55833 TCATGGAGAATCCTTCACT-GGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAG 55891 | | | | || ||| | || ||| || || ||||| |||| ||||| | | Sbjct 3143 ACGTCGCCGAGCC-AAACTACGGAAAACTGACGTCAATTCACTTCCACGGCTGGAAAATG 3201 Query 55892 GGACTCAAGACGGGTATGTACTATCTGCGGACC 55924 || | ||||| || ||||||||| |||| ||| Sbjct 3202 GGCTTGAAGACCGGAATGTACTATTTGCGCACC 3234 >seq426 Length=67415 Score = 118 bits (130), Expect = 1e-21 Identities = 207/298 (69%), Gaps = 4/298 (1%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| || | ||| || |||||||| || |||| | || || ||||| Sbjct 25107 GTGAAGATGTAACGAGGGCTAGCGCTGTCCTTGCCGCCAGCCAATCTTGTACCGAACTGA 25048 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || ||||| ||| | |||||| |||||| ||| ||| | || ||||| | ||| || Sbjct 25047 CCGTTGGGCTGGAGCAAGTTGAGATTGTTGCTGCCGACGTAGTTTTGAGCAAGATTGACG 24988 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 || || || |||| ||||||||||| || || || | | || |||| | || Sbjct 24987 ATTGTACCGCACAGAGATGCTTCACCGTGATGGTATGCTGACATTTCAGCGACCGAACCA 24928 Query 152209 GCCAACTGCGCCACCTTCATGTC-CG-TCGTCAGGTTCTTCTTGAGACAGGCGTAAATCA 152266 ||||| || || ||||| | || || | ||| ||| ||| | |||| | | || | Sbjct 24927 GCCAATTGTGCAACCTTGACTTCACGTTTGTC--GTTACGCTTTAAGCAGGTGAAGATAA 24870 Query 152267 CCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 ||||||||||| || || |||||||| || ||| ||||| ||||| || |||| Sbjct 24869 CCTTGCGCTGGCCGGGCTTTAAACCGTCGACGACGCATGGAATGGAACGAATGTTGTC 24812 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 153832 AATTTTGAACTGAAAACGTTAGCCAACTTGGCACCGTAACCATTGCGACCGCCCGTCACG 153891 || |||| |||||| | ||| || |||||| ||||| ||||||||||| || || || Sbjct 23217 AACTTTGTACTGAAGATGTTGCACAGCTTGGCTCCGTAGCCATTGCGACCACCTGTGACC 23158 Query 153892 CGTTGTTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGAT 153941 || ||| |||||||||||||| || ||||||||||| || ||||| Sbjct 23157 TTTTCTTCGTCGTCGTTGTAGTTCGACGATGTCAAAAGGTGGCCGAAGAT 23108 Score = 86.0 bits (94), Expect = 7e-12 Identities = 199/298 (67%), Gaps = 4/298 (1%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| ||| || |||||||| ||||| | | |||||||| || Sbjct 25107 GTGAAGATGTAACGAGGGCTAGCGCTGTCCTTGCCGCCAGCCAATCTTGTACCGAACTGA 25048 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | |||| | | ||| || |||||| ||| || |||||||||| | ||||| Sbjct 25047 CCGTTGGGCTGGAGCAAGTTGAGATTGTTGCTGCCGACGTAGTTTTGAGCAAGATTGACG 24988 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || ||||| || || ||||| || || || || | | || || || | || Sbjct 24987 ATTGTACCGCACAGAGATGCTTCACCGTGATGGTATGCTGACATTTCAGCGACCGAACCA 24928 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAG--GTTCTTCTTGAGGCAGGCATAAATCA 117542 |||| || || ||||| | || |||| | ||| ||| | ||||| | || | Sbjct 24927 GCCAATTGTGCAACCTTGACTTC--ACGTTTGTCGTTACGCTTTAAGCAGGTGAAGATAA 24870 Query 117543 CCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGATGTC 117600 |||||||||| | ||||| | ||| || | ||| || || ||||| || |||| Sbjct 24869 CCTTGCGCTGGCCGGGCTTTAAACCGTCGACGACGCATGGAATGGAACGAATGTTGTC 24812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547181819520600