Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Belgica_20antarctica_20[genbank_20GCA_5F000775305.1_202014-09-03] 4,997 sequences; 89,583,723 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq108 140 8e-28 seq29 140 8e-28 seq1542 107 4e-18 seq1975 104 5e-17 >seq108 Length=162490 Score = 140 bits (154), Expect = 8e-28 Identities = 168/226 (74%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | || || | |||||| || ||||| || || ||||| || || | ||| | Sbjct 111842 ACGAAGACGGAGAACCAAGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGCTCAATG- 111900 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | || ||||| ||||||||||| |||||||| || || || || || ||||||| | Sbjct 111901 TGCGACCGTCTTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATGC 111960 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 |||||||||| |||||||| || || ||||| || ||||| || || ||||||| Sbjct 111961 CTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATTGTGTCCGATGGCTCGACCTCGA 112020 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 | ||||| ||||| || ||||| || || || || | ||||| || Sbjct 112021 GGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCATCTT 112066 >seq29 Length=258594 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | |||||| || ||||| ||||||||||| || || || || | ||||||| Sbjct 96634 AGGACCAAGTGAAGTGTCGACTCCTTTTGGATGTTGTAGTCGCTCAGAGTACGTCCATCT 96575 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||| || |||||||| | || || ||||| || |||| ||||| |||||| Sbjct 96574 TCCAATTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCTTTGTCC 96515 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || |||||||| ||||| || ||||||||||| || || || Sbjct 96514 TGGATCTTGGCCTTGACATTTTCGATAGTGTCCGATGGCTCAACCTCGAGGGTAATGGTT 96455 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | || || || || | ||||| Sbjct 96454 TTACCCGTCAATGTTTTGACGAAGATTTGCAT 96423 >seq1542 Length=4837 Score = 107 bits (118), Expect = 4e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 210990 CGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATG 211049 || || ||||| || || | |||||||||||||||||||||| || || ||||| ||| Sbjct 8 CGCTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATG 67 Query 211050 GTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACC 211109 | ||| ||| ||||||||||||||||| |||||||| || | ||||| || || | Sbjct 68 GAGTCGGAGGGCTCAACCTCGAGAGTGATGGTCTTTCCGGTCAATGTCTTGACGAAGATT 127 Query 211110 TGCATTTTA 211118 |||||| || Sbjct 128 TGCATTCTA 136 Score = 96.9 bits (106), Expect = 8e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 211002 GGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT 211061 || |||| ||||||||||||||||||||| || ||||||||||||||||| || Sbjct 4836 GGGGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTAACGTTTTCGATGGTGTCTGATGGC 4777 Query 211062 TCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||||| ||||| ||||| || || | || || ||||| | ||||| Sbjct 4776 TCAACCTCGAGGGTGATGGTCTTGCCTGTCAATGTTTTGACAAAGATTTGCAT 4724 >seq1975 Length=2172 Score = 104 bits (114), Expect = 5e-17 Identities = 126/169 (75%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAA 210948 || ||| || | || || | ||| || || || ||||| |||||||| || || | ||| Sbjct 1989 TCCACGGAGACGAAGAACCAAGTGCAGTGTCGATTCTTTCTGGATGTTGTAGTCGCTCAA 2048 Query 210949 GGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 || | | |||||||| |||||||| || || ||||| | || || ||||| || || | Sbjct 2049 GG-TGCGACCATCTTCGAGCTGCTTTCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGGA 2107 Query 211009 CTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGA 211057 ||||||||| |||||||||||| || ||||| || |||| ||| || Sbjct 2108 TTCCTTCCTTATCCTGGATCTTTGCCTTAACGTTCTCAATGGAGTCTGA 2156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159077786379905