Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Belgica_20antarctica_20[genbank_20GCA_5F000775305.1_202014-09-03] 4,997 sequences; 89,583,723 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq29 154 4e-32 seq1975 134 3e-26 seq108 129 1e-24 seq1542 102 2e-16 >seq29 Length=258594 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| | || || ||||| || ||||||||||| || || ||| Sbjct 96426 CAAATCTTCGTCAAAACATTGACGGGTAAAACCATTACCCTCGAGGTTGAGCCATCGGAC 96485 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| ||||| |||||||||||||| || || || |||||||| Sbjct 96486 ACTATCGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCAGCAG 96545 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | |||||||||||||| || | ||||||||| | ||||| ||| || ||| || Sbjct 96546 CGATTGATCTTCGCCGGAAAGCAATTGGAAGATGGACGTACTCTGAGCGACTACAACATC 96605 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || ||||| || |||| Sbjct 96606 CAAAAGGAGTCGACACTTCA-CTTG 96629 >seq1975 Length=2172 Score = 134 bits (148), Expect = 3e-26 Identities = 125/155 (81%), Gaps = 3/155 (2%) Strand=Plus/Minus Query 177978 TCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGAC 178037 |||||| |||| |||||||| || |||||| ||||| || ||||||||||| || ||| Sbjct 2156 TCAGACTCCATTGAGAACGTTAAGGCAAAGATCCAGGATAAGGAAGGAATCCCCCCAGAC 2097 Query 178038 CAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTA 178096 ||||| ||| | ||||| || ||||| |||||||||||||| | || |||| ||| || Sbjct 2096 CAGCAGCGATTGATCTTTGCTGGAAAGCAGCTCGAAGATGGTCGCAC-CTTGAGCGACTA 2038 Query 178097 TAACGTCCAAAAAGAATCAACACTGCATCTTGTTT 178131 ||| |||| |||||||| |||||||| |||| || Sbjct 2037 CAACATCCAGAAAGAATCGACACTGCA-CTTGGTT 2004 >seq108 Length=162490 Score = 129 bits (142), Expect = 1e-24 Identities = 154/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||||||||| ||||| || || || |||||||||||||| || || ||| Sbjct 112060 CAAATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGCCATCGGAC 112001 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| ||||| || ||||| ||||| || ||||| || ||||| Sbjct 112000 ACAATTGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCAGCAG 111941 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| ||||| || | || | ||| || ||| | Sbjct 111940 CGTCTGATCTTCGCTGGCAAGCAGCTTGAAGACGGTCGCACATTGAGCGACTACAACATT 111881 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || || || ||||| || |||| || Sbjct 111880 CAGAAGGAGTCGACACTTCA-CTTGGTT 111854 >seq1542 Length=4837 Score = 102 bits (112), Expect = 2e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || ||||| || ||||| |||||||| || ||| ||| Sbjct 129 CAAATCTTCGTCAAGACATTGACCGGAAAGACCATCACTCTCGAGGTTGAGCCCTCCGAC 70 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||| || || ||||| |||||| |||||||| ||||||||||| || |||||||| Sbjct 69 TCCATTGAAAATGTCAAGGCAAAGATCCAGGACAAGGAAGGAATCCCCCCAGACCAGCAG 10 Query 178044 CGACTTATC 178052 ||| | ||| Sbjct 9 CGATTGATC 1 Score = 91.5 bits (100), Expect = 4e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| | ||||| || || |||||||||||||| || |||||| Sbjct 4727 CAAATCTTTGTCAAAACATTGACAGGCAAGACCATCACCCTCGAGGTTGAGCCATCAGAC 4786 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCC 178033 |||||||| ||||| || ||||| |||||||| |||||||| || || Sbjct 4787 ACCATCGAAAACGTTAAGGCTAAGATCCAGGACAAGGAAGGAATTCCCCC 4836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203654132238418