Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq10062 105 8e-18 seq16 95.1 1e-14 >seq10062 Length=763049 Score = 105 bits (116), Expect = 8e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||| ||| || || || || | | |||||||||||| || || | || || || || Sbjct 235914 ATCTCTAATGTAAGTGTCGATGAGTAAACTATACATTTCAGAGTGGACATTCTCCATTGC 235973 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514 ||||| || || |||||||| | || || || | || || ||| || |||| ||| Sbjct 235974 TATTTGGAAGCCATAGAAACAACGTGCTTCCGTTACTTGAACCTCTTGACTGAATCTTTC 236033 Query 24515 TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 24574 | | | |||||||| || || || || ||| |||||||| || | |||||| || Sbjct 236034 TACCAGGTTTTCATTAACGATACCATCCGAGGCAGCAAAAAATGCAAGTACATGCGAAAT 236093 Query 24575 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATC 24610 ||||| ||| ||||| ||| ||| ||| | |||||| Sbjct 236094 AAAATGTTTCTCGTCCGGTTTTAATTTTTCCCAATC 236129 Score = 84.2 bits (92), Expect = 3e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 23949 CCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAA 24008 |||||||| || | || || || || || || ||||| ||||||| | | Sbjct 234071 CCCAATTCGACAAGAAGCCTGTCAGCCACGAATTCAATATACTGCTTCATCAGAGTCCCA 234130 Query 24009 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 24068 |||||||| || | |||||| | |||| | |||||||| ||||||||||| || Sbjct 234131 TTCATTCCAATCATAGCAACTGGCAAAGCCTCGGTAAGAAACTCTTGTTCAATCTTCACT 234190 Query 24069 GCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAAC 24128 ||||| |||| || | ||| | |||||||| ||| | | | ||||| ||| Sbjct 234191 GCGTCCATTATGATTTCCTTAACTCTATCTTCACTGGGTTTTTGAATGATGTGTTTGAAC 234250 Query 24129 ATCAAACATGCGAAATCGCAGTGTAGACCCT 24159 |||| || |||||||| ||||| ||||||| Sbjct 234251 ATCAGGCACGCGAAATCACAGTGGAGACCCT 234281 >seq16 Length=5839711 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 53731 TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGT 53790 ||| |||| || ||| |||| ||| || ||||| || | || |||||||||||||| Sbjct 3535912 TACTTCATCTTCAGCCGTGTATTCTATAATTTCAGTACACAAGTTGCTACACTTGATGGT 3535971 Query 53791 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGT 53850 ||||| |||||||||||| ||| ||||||| |||||||| || || || |||| Sbjct 3535972 TCCTAGATTTTGTTGATTTGACTTGCTGTTACAGGCATCCTTGTAGAGCATATATGGTAC 3536031 Query 53851 ACCAGTTTCAATCTGGGATTCTATAATCGC 53880 ||| ||||| | || || || | ||| || Sbjct 3536032 ACCTGTTTCTACTTGCGAATCCAGAATGGC 3536061 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 53954 AACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCAC 54013 ||||| |||||||| || |||||||||||| || | ||||||||| | |||| Sbjct 3537624 AACTCTTCTCCCCAGCAATCTGACAATCCAGGACAGTCGTTCGGACACATGAGACTCCAC 3537683 Query 54014 TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGA 54073 |||| | | | |||| ||||| || ||||||||||||||| || ||| ||| Sbjct 3537684 ACTCCATTCTGTTCAACTCTCTTCATGAATTCATCAGGAATCCAAAGGGCGTAAAAGAGA 3537743 Query 54074 TCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATA 54133 || | | || ||| || |||||||| || || || | || | || | | |||| Sbjct 3537744 TCACGTGCTCGCACTTCTTCTTTTCCTGTGTTTTTCTTCAAGTCTAAAAATTCAAAAATA 3537803 Query 54134 TCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCG 54177 || | |||||| ||||||| || || | | | ||||||| || Sbjct 3537804 TCCGCATGCCAAGGTTCCAGATAAATTGCAAAAGCTCCAGGACG 3537847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593575017558480