Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq5939 114 1e-20 seq4538 113 5e-20 seq5367 111 2e-19 seq39 111 2e-19 seq1295 109 6e-19 seq31 109 6e-19 seq2522 107 2e-18 seq933 107 2e-18 seq16099 105 8e-18 seq5321 105 8e-18 seq4927 105 8e-18 seq99 105 8e-18 seq20 89.7 6e-13 >seq5939 Length=1455655 Score = 114 bits (126), Expect = 1e-20 Identities = 88/103 (85%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 60036 AACAACAAATTAACGTTTATGAAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCT 60094 ||||| || || || | ||| |||||| || ||| |||| ||||||||||||| ||||| Sbjct 389772 AACAATAAGTTGACCTGCATGTAAAATTATCCTCCCCGGCGGGGAATCGAACCCCGGTCT 389713 Query 60095 CCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 60137 |||||||||||||||| ||||| ||||||||||||||||||| Sbjct 389712 CCCGCGTGACAGGCGGGGATACTGACCACTATACTACCGAGGA 389670 >seq4538 Length=2161205 Score = 113 bits (124), Expect = 5e-20 Identities = 73/80 (91%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 ||||||| |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 2000091 AAAATTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 2000032 Query 60118 CACCACTATACTACCGAGGA 60137 ||||||||||||||||||| Sbjct 2000031 GACCACTATACTACCGAGGA 2000012 >seq5367 Length=1128 Score = 111 bits (122), Expect = 2e-19 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 60053 TATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 60112 ||| |||| | | |||| |||| ||||||||||||| ||||||||||||||||||||| Sbjct 630 TATTAAAATTGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGG 689 Query 60113 ATACTCACCACTATACTACCGAGGATTGA 60141 ||||| ||||||||||||||||||| ||| Sbjct 690 ATACTAACCACTATACTACCGAGGACTGA 718 >seq39 Length=1366542 Score = 111 bits (122), Expect = 2e-19 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 35732 AAAAATGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 35791 Query 60117 TCACCACTATACTACCGAGGATTG 60140 | ||||||||||||||||||| || Sbjct 35792 TGACCACTATACTACCGAGGACTG 35815 >seq1295 Length=1447707 Score = 109 bits (120), Expect = 6e-19 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1125166 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 1125225 Query 60126 TACTACCGAGGATTG 60140 ||||||||||||||| Sbjct 1125226 TACTACCGAGGATTG 1125240 >seq31 Length=3932601 Score = 109 bits (120), Expect = 6e-19 Identities = 77/88 (88%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 || |||| | | |||| |||| ||||||||||||| ||||||||||||||||||||| | Sbjct 3726097 ATAAAAACTATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 3726156 Query 60114 TACTCACCACTATACTACCGAGGATTGA 60141 |||| ||||||||||||||||||| ||| Sbjct 3726157 TACTGACCACTATACTACCGAGGACTGA 3726184 Score = 109 bits (120), Expect = 6e-19 Identities = 83/97 (86%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 60045 TTAACGTTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGAC 60104 || ||| ||| |||| | | |||| |||| ||||||||||||| ||||||||||||||| Sbjct 3733134 TTTACGATTA--AAAACTATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGAC 3733077 Query 60105 AGGCGGACATACTCACCACTATACTACCGAGGATTGA 60141 |||||| ||||| ||||||||||||||||||| ||| Sbjct 3733076 AGGCGGGGATACTGACCACTATACTACCGAGGACTGA 3733040 >seq2522 Length=5322025 Score = 107 bits (118), Expect = 2e-18 Identities = 77/88 (88%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 60055 TGAAAAATT--TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 60112 ||||||| | | |||| |||| ||||||||||||| ||||||||||||||||||||| Sbjct 962489 TGAAAAAATAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGG 962430 Query 60113 ATACTCACCACTATACTACCGAGGATTG 60140 ||||| ||||||||||||||||||| || Sbjct 962429 ATACTGACCACTATACTACCGAGGACTG 962402 >seq933 Length=6104033 Score = 107 bits (118), Expect = 2e-18 Identities = 77/89 (87%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 60053 TATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 60112 ||| |||| | |||| |||| ||||||||||||| ||||||||||||||||||||| Sbjct 3790217 TATTAAAATAGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGG 3790276 Query 60113 ATACTCACCACTATACTACCGAGGATTGA 60141 ||||| ||||||||||||||||||| ||| Sbjct 3790277 ATACTGACCACTATACTACCGAGGACTGA 3790305 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| || | ||||| || | || |||| |||||||||||||| Sbjct 5593984 TCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCTTCTAATTGCTTACCAGCGAAG 5594043 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| || |||||||| | || | | |||||||| ||| || |||| || Sbjct 5594044 ATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTC 5594103 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||| | ||| || || | ||||| || || || ||||| ||||| || Sbjct 5594104 TCGATGGTGTCAGAGGCTTCTACCTCCAAGGTGATAGTCTTTCCGGTTAGTGTCTTGACG 5594163 Query 43173 AAGATTTGCATTTTT 43187 ||||| ||||||||| Sbjct 5594164 AAGATCTGCATTTTT 5594178 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || |||||||||| ||||| || | || || || || ||||||||||| Sbjct 5592388 TCCTTCTGGATGTTGTAATCAGAAAGAGTACGGCCATCTTCCAGTTGTTTACCAGCGAAG 5592447 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| || |||||||| | || | | |||||||| ||| || || | || Sbjct 5592448 ATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTC 5592507 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||| | || || || | ||||||||||| || || || ||||| || Sbjct 5592508 TCGATGGTGTCAGAAGCCTCAACTTCCAAGGTGATGGTTTTTCCTGTGAGAGTCTTGACG 5592567 Query 43173 AAGATTTGCAT 43183 || |||||||| Sbjct 5592568 AAAATTTGCAT 5592578 >seq16099 Length=3019828 Score = 105 bits (116), Expect = 8e-18 Identities = 78/91 (86%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 60050 GTTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCG 60109 |||||| ||| | |||| |||| ||||||||||||| |||||||||||||||||||| Sbjct 1724892 GTTTATAAAACGAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCG 1724833 Query 60110 GACATACTCACCACTATACTACCGAGGATTG 60140 | ||||| ||||||||||||||||||| || Sbjct 1724832 GGGATACTGACCACTATACTACCGAGGACTG 1724802 Score = 105 bits (116), Expect = 8e-18 Identities = 78/91 (86%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 60050 GTTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCG 60109 |||||| ||| | |||| |||| ||||||||||||| |||||||||||||||||||| Sbjct 1730320 GTTTATAAAACGAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCG 1730261 Query 60110 GACATACTCACCACTATACTACCGAGGATTG 60140 | ||||| ||||||||||||||||||| || Sbjct 1730260 GGGATACTGACCACTATACTACCGAGGACTG 1730230 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1978592 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 1978533 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 1978532 TACTACCGAGGA 1978521 >seq5321 Length=1898 Score = 105 bits (116), Expect = 8e-18 Identities = 75/85 (88%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||| || ||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 1302 AAAAATAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 1243 Query 60116 CTCACCACTATACTACCGAGGATTG 60140 || ||||||||||||||||||| || Sbjct 1242 CTGACCACTATACTACCGAGGACTG 1218 >seq4927 Length=1830680 Score = 105 bits (116), Expect = 8e-18 Identities = 75/85 (88%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||| || ||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 1190276 AAAAATCGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 1190335 Query 60116 CTCACCACTATACTACCGAGGATTG 60140 || ||||||||||||||||||| || Sbjct 1190336 CTTACCACTATACTACCGAGGACTG 1190360 >seq99 Length=1495679 Score = 105 bits (116), Expect = 8e-18 Identities = 75/85 (88%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||| || ||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 539580 AAAAATAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 539639 Query 60116 CTCACCACTATACTACCGAGGATTG 60140 || ||||||||||||||||||| || Sbjct 539640 CTGACCACTATACTACCGAGGACTG 539664 >seq20 Length=9260020 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| || | || ||||| || | || ||| ||||| || ||||| || | Sbjct 134475 CCTCCTCTCAATCTCAGGACCAAGTGAAGGGTAGACTCTTTTTGGATGTTGTAGTCGGAG 134416 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| | | || |||| ||| || || ||||| || | ||||| ||||| | || Sbjct 134415 AGAGTTCTTCCATCTTCTAACTGTTTGCCGGCGAAGATCAAACGCTGTTGGTCAGGGGGA 134356 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||||||||| ||||||| || | || | | ||||| | || || Sbjct 134355 ATGCCTTCCTTGTCCTGGATTTTTGCCTTCACATTCTCAATTGTGTCTGAAGCCTCAACT 134296 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| ||||||||||| || |||| ||||| ||||| || ||||| Sbjct 134295 TCGAGGGTGATGGTTTTCCCTGTTAAGGTCTTGACAAAAATCTGCAT 134249 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || ||||| || ||||| || | |||||| | | || || | |||||| ||||| || Sbjct 134895 TCTTTTTGGATGTTGTAGTCGGACAGAGTTCTTCCATCTTCCAACTGCTTGCCAGCAAAG 134836 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | ||||| ||||| | || | || ||||||||| |||||| ||| | | Sbjct 134835 ATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCTTTCACGTTT 134776 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||| | ||| || || | |||||||||||||| ||||| || || ||| Sbjct 134775 TCAATAGTGTCTGAGGCTTCAACTTCTAGAGTGATGGTTTTGCCTGTTAGGGTTTTGACA 134716 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 134715 AAGATCTGCAT 134705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571676425382280