Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq20 98.7 6e-16 seq933 96.9 2e-15 >seq20 Length=9260020 Score = 98.7 bits (108), Expect = 6e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 |||||| || ||||||||||||||||| | | || |||||||||||||| || || Sbjct 134896 TTCTTTTTGGATGTTGTAGTCGGACAGAGTTCTTCCATCTTCCAACTGCTTGCCAGCAAA 134837 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 || | ||||| ||||| ||| | || |||||||| || ||| ||||| | | Sbjct 134836 GATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCCTGGAT-TTTGGCTTTCACGT 134778 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | || | | ||| || || | |||||||||||||| || || ||||| | Sbjct 134777 TTTCAATAGTGTCTGAGGCTTCAACTTCTAGAGTGATGGTTTTGCCTGTTAGGGTTTTGA 134718 Query 34377 CAAAGATCTGCAT 34389 ||||||||||||| Sbjct 134717 CAAAGATCTGCAT 134705 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 34175 CTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCG 34234 ||||| |||| ||| | ||| |||||||| |||||||||||||| || | | Sbjct 134691 CTCAGGACCAAGTGAAGTGTAGACTCTTTCTGGATGTTGTAGTCGGAGAGAGTTCTTCCA 134632 Query 34235 TCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTG 34294 || || |||||||| || ||||| || | ||||| ||||| ||| | | |||||| Sbjct 134631 TCTTCTAACTGCTTTCCGGCGAAGATCAAACGCTGTTGGTCAGGGGGAATTCCTTCCTTG 134572 Query 34295 TCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATG 34354 || || ||| ||| | || | || | || | | ||| || |||| || || Sbjct 134571 TCCTGGATTTTTGCCTTAACATTCTCAATTGTGTCTGATGCTTCAACTTCCAGGGTAATT 134512 Query 34355 GTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| || || || |||||||| || ||||| Sbjct 134511 GTTTTGCCAGTCAGCGTCTTCACAAAAATTTGCAT 134477 >seq933 Length=6104033 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| || || || | || | |||| ||| ||||| ||||||||||| || Sbjct 5592124 CCACCACGCAGTCTGAGAACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCTGAT 5592183 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC--GACGG 34280 || ||| | || || || ||||| || ||||| ||||| || |||||||| || || Sbjct 5592184 AGAGTGCGGCCATCTTCTAATTGCTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGG 5592243 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 || || |||||||| ||||| ||| | || | || | ||| | | || | Sbjct 5592244 ATAC-CT-TCCTTGTCTTGGATCTTGGCCTTAACATTCTCGATAGTATCAGAGGCCTCTA 5592301 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| ||||||||||| || |||||||| || || || || ||||| Sbjct 5592302 CTTCCAAGGTGATGGTTTTTCCTGTGAGAGTCTTGACGAAAATTTGCAT 5592350 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA- 34221 || || ||||| || || || | || | ||| |||||| || ||||||||||| || Sbjct 5593492 CCACCACGCAGTCTGAGAACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCTGAT 5593551 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC--GACG 34279 || || ||| | || || || || || || ||||| ||||| || |||||||| || | Sbjct 5593552 AAGGTG-CGGCCATCTTCTAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGG 5593610 Query 34280 GGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCG 34339 | || || |||||||| ||||| ||| | || | || | ||||| | || Sbjct 5593611 GATAC-CT-TCCTTGTCTTGAATCTTAGCCTTAACATTTTCAATGGTATCGGAGGCCTCA 5593668 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||| ||||||||||| || ||||| || || ||||| || ||||| Sbjct 5593669 ACTTCCAAGGTGATGGTTTTCCCTGTGAGGGTCTTGACAAAAATTTGCAT 5593718 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA- 34221 || || ||||| || || || | || | ||| |||||| || |||||||||||||| Sbjct 5593720 CCACCACGCAGTCTGAGAACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCGGAT 5593779 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC--GACG 34279 || || ||| | || || || || || || ||||| ||||| || |||||||| || | Sbjct 5593780 AAGGTG-CGGCCATCTTCTAATTGTTTACCGGCGAAGATGAGACGTTGCTGGTCTGGAGG 5593838 Query 34280 GGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCG 34339 | || || |||||||| ||||| ||| | || | || | |||| | || Sbjct 5593839 GATAC-CT-TCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCGGAAGCCTCA 5593896 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||| |||||||| || || ||||| || || ||||| || ||||| Sbjct 5593897 ACTTCCAAAGTGATGGTCTTTCCAGTGAGGGTCTTGACAAAAATTTGCAT 5593946 Score = 86.0 bits (94), Expect = 4e-12 Identities = 141/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 34192 AGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCC 34251 |||| ||| ||||| ||||||||||| || || ||| | || || || ||||| || Sbjct 5593977 AGTAGATTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCTTCTAATTGCTTACC 5594036 Query 34252 TGCGAAAATGAGCCGCTGCTGGTC--GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGC 34309 ||||| ||||| || |||||||| || || || || |||||||| ||||| | Sbjct 5594037 AGCGAAGATGAGACGTTGCTGGTCTGGAGGGATAC-CT-TCCTTGTCTTGGATCTTGGCC 5594094 Query 34310 TTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGA 34369 || | || | || | || | | ||| || |||| ||||| || || ||||| || Sbjct 5594095 TTGACATTCTCGATGGTGTCAGAGGCTTCTACCTCCAAGGTGATAGTCTTTCCGGTTAGT 5594154 Query 34370 GTTTTCACAAAGATCTGCAT 34389 || || || ||||||||||| Sbjct 5594155 GTCTTGACGAAGATCTGCAT 5594174 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGA-CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGA 34256 |||||| || ||||||||||| || || || ||| | || || || || || || |||| Sbjct 5593071 TTCTTTTTGAATGTTGTAGTCTGATAAGGTG-CGGCCATCTTCTAATTGTTTACCAGCGA 5593129 Query 34257 AAATGAGCCGCTGCTGGTC--GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAG 34314 | ||||| || |||||||| || || || || |||||||| ||||| ||| | Sbjct 5593130 AGATGAGACGTTGCTGGTCTGGAGGGATAC-CT-TCCTTGTCTTGAATCTTAGCCTTAAC 5593187 Query 34315 ATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTT 34374 || | || | ||||| | || || |||| |||||||| || || ||||| || || Sbjct 5593188 ATTTTCAATGGTATCGGAGGCCTCAACTTCCAAGGTGATGGTCTTTCCAGTGAGGGTCTT 5593247 Query 34375 CACAAAGATCTGCAT 34389 ||||| || ||||| Sbjct 5593248 GACAAAAATTTGCAT 5593262 Score = 82.4 bits (90), Expect = 5e-11 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA- 34221 || || ||||| || || || | || | ||| |||||| || |||||||||||||| Sbjct 5593264 CCACCACGCAGTCTGAGAACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCGGAT 5593323 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC--GACG 34279 || || ||| | || || || || || || ||||| ||||| || |||||||| || | Sbjct 5593324 AAGGTG-CGGCCATCTTCTAATTGTTTACCGGCGAAGATGAGACGTTGCTGGTCTGGAGG 5593382 Query 34280 GGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCG 34339 | || || |||||||| ||||| ||| | || | || | || | | ||| Sbjct 5593383 GATAC-CT-TCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGCTTCT 5593440 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||| |||||||| || || ||||| || || || || || ||||| Sbjct 5593441 ACCTCCAAGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAAATTTGCAT 5593490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322994231622560