Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq10062 136 4e-27 >seq10062 Length=763049 Score = 136 bits (150), Expect = 4e-27 Identities = 154/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 16489 TTCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATT 16548 ||||||| |||| ||| ||||| || || ||||||||||||||||| || || | ||| Sbjct 235905 TTCTTTGGGATCTCTAATGTAAGTGTCGATGAGTAAACTATACATTTCAGAGTGGACATT 235964 Query 16549 CTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC-AGAGT 16607 |||||||||||| || || ||||| || || | ||||| | || ||| || || || | Sbjct 235965 CTCCATTGCTATTTGGAAGCCATAGAAACAACGTGCTTCCGTTACTTGAACCTCTTGACT 236024 Query 16608 AAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTA 16667 || |||||| | | |||||| ||||| || ||||| || |||||||| ||||||| Sbjct 236025 -GAATCTTTCTACCAGGTTTTCATTAACGATACCATCCGAGGCAGCAAAAAATGCAAGTA 236083 Query 16668 TGTGTTTAATAAAAtttttttCGT 16691 || |||||||| ||| |||| Sbjct 236084 CATGCGAAATAAAATGTTTCTCGT 236107 Score = 95.1 bits (104), Expect = 1e-14 Identities = 120/165 (73%), Gaps = 5/165 (3%) Strand=Plus/Plus Query 15864 CAACTATCAATAATAATTA-----ACTTTAAAAATCAATATCTAGAGAAAACACATTATC 15918 ||||||||| | | | ||| || |||||||||| ||| | ||| || |||| | Sbjct 232465 CAACTATCAGTGAGAGTTATTAATACATTAAAAATCAGCATCCAAAGAGAAGACATGCGC 232524 Query 15919 TTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATT 15978 | |||||||||||| || |||| |||||||| | |||| | || || ||||| || Sbjct 232525 ATCTTTATTTGACATGACACCACTTTTCTGATATTCTCCAACTTTTTTCTCGAAGAAGTT 232584 Query 15979 TGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATT 16023 |||||| || || | || || | |||||| || ||||||||||| Sbjct 232585 TGTTTTACCCTCCAGAGAGATCTGTTCCATGAAGTCAAAAGGATT 232629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462397811568600