Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq10062 114 2e-20 seq16 96.9 4e-15 >seq10062 Length=763049 Score = 114 bits (126), Expect = 2e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||| ||| ||||| ||||| | | |||||||||||| || || | || || || || Sbjct 235914 ATCTCTAATGTAAGTGTCGATGAGTAAACTATACATTTCAGAGTGGACATTCTCCATTGC 235973 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961 || || || || |||||||| | || || || | || || ||| || |||| ||| Sbjct 235974 TATTTGGAAGCCATAGAAACAACGTGCTTCCGTTACTTGAACCTCTTGACTGAATCTTTC 236033 Query 33962 TGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 34021 | | | |||||||| || || ||||| ||| |||||||| || | |||||| || Sbjct 236034 TACCAGGTTTTCATTAACGATACCATCCGAGGCAGCAAAAAATGCAAGTACATGCGAAAT 236093 Query 34022 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATC 34057 ||||| ||| ||||| ||| ||| ||| | |||||| Sbjct 236094 AAAATGTTTCTCGTCCGGTTTTAATTTTTCCCAATC 236129 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 33396 CCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAA 33455 |||||||| || | || || || |||||||| ||||| ||||||| | | Sbjct 234071 CCCAATTCGACAAGAAGCCTGTCAGCCACGAATTCAATATACTGCTTCATCAGAGTCCCA 234130 Query 33456 TTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACC 33515 |||||||| || | |||||| | |||| | |||||||| ||||||||||| || Sbjct 234131 TTCATTCCAATCATAGCAACTGGCAAAGCCTCGGTAAGAAACTCTTGTTCAATCTTCACT 234190 Query 33516 GCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAAC 33575 || | |||| || |||| | |||||||| ||| || | | ||||| ||| Sbjct 234191 GCGTCCATTATGATTTCCTTAACTCTATCTTCACTGGGTTTTTGAATGATGTGTTTGAAC 234250 Query 33576 ATCAAACATGCGAAATCGCAGTGCAGACCCT 33606 |||| || |||||||| ||||| ||||||| Sbjct 234251 ATCAGGCACGCGAAATCACAGTGGAGACCCT 234281 >seq16 Length=5839711 Score = 96.9 bits (106), Expect = 4e-15 Identities = 157/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 63190 CGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACC 63249 ||||||| |||||||| || ||||| |||||| || | ||||||||| | || Sbjct 3537622 CGAACTCTTCTCCCCAGCAATCTGACAATCCAGGACAGTCGTTCGGACACATGAGACTCC 3537681 Query 63250 ACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 63309 || |||| | | | |||| ||||| || ||||||||||||||| || ||| | Sbjct 3537682 ACACTCCATTCTGTTCAACTCTCTTCATGAATTCATCAGGAATCCAAAGGGCGTAAAAGA 3537741 Query 63310 GATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAA 63369 |||| | || || ||| || |||||||| || || || | || | || | | || Sbjct 3537742 GATCACGTGCTCGCACTTCTTCTTTTCCTGTGTTTTTCTTCAAGTCTAAAAATTCAAAAA 3537801 Query 63370 TATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63415 |||| | |||||| ||||||| || || || | | ||||||| || Sbjct 3537802 TATCCGCATGCCAAGGTTCCAGATAAATTGCAAAAGCTCCAGGACG 3537847 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 62969 TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGT 63028 ||| |||| || ||| |||| ||| || ||||| || | || ||||||||||| || Sbjct 3535912 TACTTCATCTTCAGCCGTGTATTCTATAATTTCAGTACACAAGTTGCTACACTTGATGGT 3535971 Query 63029 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGT 63088 ||||| |||||||||||| ||| ||||||| |||||||| || || || |||| Sbjct 3535972 TCCTAGATTTTGTTGATTTGACTTGCTGTTACAGGCATCCTTGTAGAGCATATATGGTAC 3536031 Query 63089 ACCAGTTTCAATCTGAGATTCTATAATCGC 63118 ||| ||||| | || || || | ||| || Sbjct 3536032 ACCTGTTTCTACTTGCGAATCCAGAATGGC 3536061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629662105907280