Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq10062 114 1e-20 seq16 93.3 4e-14 >seq10062 Length=763049 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||||| | || || || || | ||||||||||||||| || || | ||| ||||| || Sbjct 235914 ATCTCTAATGTAAGTGTCGATGAGTAAACTATACATTTCAGAGTGGACATTCTCCATTGC 235973 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTC 12009 |||||| || ||||||||||| ||||| || | || || || | |||||||| Sbjct 235974 TATTTGGAAGCCATAGAAACAACGTGCTTCCGTTACTTGAACCTCTTGACTGAATCTTTC 236033 Query 12010 CGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTAT 12069 | | || ||||| || |||||||| | ||||||||||| |||| ||| || Sbjct 236034 TACCAGGTTTTCATTAACGATACCATCCGAGGCAGCAAAAAATGCAAGTACATGCGAAAT 236093 Query 12070 AAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATC 12105 ||| | ||| ||||| ||||||| |||||||| Sbjct 236094 AAAATGTTTCTCGTCCGGTTTTAATTTTTCCCAATC 236129 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/225 (70%), Gaps = 7/225 (3%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| |||| | ||||||||||| || || | || |||||||| || | ||| | Sbjct 235001 CTTCATCTCGAGAGATTAGTTCATTGCTGAAAGTGAGGCCAGGCATCAAACCCCTTTTCT 235060 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 | | ||| || || | || || ||||| ||||| ||||| |||||||||||||||| Sbjct 235061 TCAGCCAGAAAATTGAGGCGAAACTGCCAGAGAAGAAGATTCCTTCCACAGCTGCAAATG 235120 Query 11772 CTACTACTCTTTCTCCATATACCTTGTTGC-----TAGATATCCATTTTCTGGCCCAATC 11826 | | |||| ||| | | |||| ||| || |||||||| ||||||| || Sbjct 235121 CAATCACTCGTTCGGC--GAAGCTTGATGCATCATCAGCGATCCATTTCATGGCCCAGTC 235178 Query 11827 AGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAA 11871 |||||| | ||||| || ||||||||| || || || || || Sbjct 235179 TGCTTTCCTCTTTACACAAGGCATTGTTTCAATGGCATTGAACAA 235223 >seq16 Length=5839711 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 ||||| || ||||| || | || | || | || || || || || |||||||||| Sbjct 3534011 ACCTGGAATTCTCCGGAGAGGACCCGCCTCGAGTAGATGTTACTTGTGTATGGTTCAAAA 3534070 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 || || || || | ||| || |||| || || || || ||||| ||||||| || ||| Sbjct 3534071 GATTCGTTGTTGCCTAAGATCTGAGCAGTTGAAGCTGTTGGCATGGGTGCTAGAAGGAGG 3534130 Query 37258 CTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCT 37317 || | || ||||||| | |||| | | |||||| || ||| ||||| |||||| Sbjct 3534131 GAGTTACGCACTCCATGTTTGGCAATTTTTTGTTTTAGCGCAGCCCAGTCCCACAAATCT 3534190 Query 37318 GTTGGGTT--CTTTAACCACATATCATATTGTAGAAT 37352 |||||| | | || ||||||||| || || | ||| Sbjct 3534191 GTTGGGGTAACATT--CCACATATCGTACTGCAAAAT 3534225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468409127083440