Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq10062 102 1e-16 seq16 95.1 2e-14 >seq10062 Length=763049 Score = 102 bits (112), Expect = 1e-16 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||| ||| || || || || | | |||||||||||| || || | || || || || Sbjct 235914 ATCTCTAATGTAAGTGTCGATGAGTAAACTATACATTTCAGAGTGGACATTCTCCATTGC 235973 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537 ||||| || || |||||||| | || || || | || || ||| || |||| ||| Sbjct 235974 TATTTGGAAGCCATAGAAACAACGTGCTTCCGTTACTTGAACCTCTTGACTGAATCTTTC 236033 Query 36538 TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 36597 | | | |||||||| || || || || ||| |||||||| || | |||||| || Sbjct 236034 TACCAGGTTTTCATTAACGATACCATCCGAGGCAGCAAAAAATGCAAGTACATGCGAAAT 236093 Query 36598 AAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATC 36633 ||||| ||| |||| ||| ||| ||| | |||||| Sbjct 236094 AAAATGTTTCTCGTCCGGTTTTAATTTTTCCCAATC 236129 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 35972 CCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAA 36031 |||||||| || | || || || || ||||| ||||| ||||||| | | Sbjct 234071 CCCAATTCGACAAGAAGCCTGTCAGCCACGAATTCAATATACTGCTTCATCAGAGTCCCA 234130 Query 36032 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 36091 |||||||| || | |||||| | |||| | |||||||| ||||||||||| || Sbjct 234131 TTCATTCCAATCATAGCAACTGGCAAAGCCTCGGTAAGAAACTCTTGTTCAATCTTCACT 234190 Query 36092 GCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAAC 36151 ||||| |||| || | ||| | |||||||| ||| | | | ||||| ||| Sbjct 234191 GCGTCCATTATGATTTCCTTAACTCTATCTTCACTGGGTTTTTGAATGATGTGTTTGAAC 234250 Query 36152 ATCAAACATGCGAAATCGCAGTGTAGACCCT 36182 |||| || |||||||| ||||| ||||||| Sbjct 234251 ATCAGGCACGCGAAATCACAGTGGAGACCCT 234281 >seq16 Length=5839711 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 65762 TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGT 65821 ||| |||| || ||| |||| ||| || ||||| || | || |||||||||||||| Sbjct 3535912 TACTTCATCTTCAGCCGTGTATTCTATAATTTCAGTACACAAGTTGCTACACTTGATGGT 3535971 Query 65822 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGT 65881 ||||| |||||||||||| ||| ||||||| |||||||| || || || |||| Sbjct 3535972 TCCTAGATTTTGTTGATTTGACTTGCTGTTACAGGCATCCTTGTAGAGCATATATGGTAC 3536031 Query 65882 ACCAGTTTCAATCTGAGATTCTATAATCGC 65911 ||| ||||| | || || || | ||| || Sbjct 3536032 ACCTGTTTCTACTTGCGAATCCAGAATGGC 3536061 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 65983 CGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACC 66042 ||||||| |||||||| || |||||||||||| || | ||||||||| | || Sbjct 3537622 CGAACTCTTCTCCCCAGCAATCTGACAATCCAGGACAGTCGTTCGGACACATGAGACTCC 3537681 Query 66043 ACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 66102 || |||| | | | |||| ||||| || ||||||||||||||| || ||| | Sbjct 3537682 ACACTCCATTCTGTTCAACTCTCTTCATGAATTCATCAGGAATCCAAAGGGCGTAAAAGA 3537741 Query 66103 AATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAA 66162 ||| | | || ||| || |||||||| || || || | || | || | | || Sbjct 3537742 GATCACGTGCTCGCACTTCTTCTTTTCCTGTGTTTTTCTTCAAGTCTAAAAATTCAAAAA 3537801 Query 66163 TATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 66208 |||| |||||| ||||||| || || || | | ||||||| || Sbjct 3537802 TATCCGCATGCCAAGGTTCCAGATAAATTGCAAAAGCTCCAGGACG 3537847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658010305362840