Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq933 107 2e-18 seq115 91.5 1e-13 seq20 89.7 5e-13 >seq933 Length=6104033 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | |||||||||||||| | || || |||||||||||||| || ||| Sbjct 5591439 GCCACCACGAAGTCGCAAAACTAAGTGGAGAGTGGATTCTTTTTGAATGTTGTAGTCGGA 5591498 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||||| | ||||||||||| |||| ||||||||||| || ||||| Sbjct 5591499 TAGGGTGCGGCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGG 5591558 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || || | | || | ||||| | | || || Sbjct 5591559 GATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAAGCTTCTAC 5591618 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | ||| | ||||| || || | || || ||||| ||||||||| Sbjct 5591619 CTCCAAGGTGATAGTCTTTCCTGTGAGGGTCTTGACGAAAATTTGCATA 5591667 Score = 102 bits (112), Expect = 8e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 |||||| |||| || || |||||||||||||| ||||| | |||| ||||| Sbjct 5591685 AACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAATCTGATAAGGTGCGGCCATCTTC 5591744 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 | ||||||||||| |||| ||||||||||| || ||||| || ||||| ||||| Sbjct 5591745 CAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGGATACCTTCCTTGTCTTG 5591804 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| || || | | || | || |||| || ||| || || | ||| | ||||| Sbjct 5591805 GATCTTGGCCTTGACATTCTCAATGGTATCGGAGGCCTCAACTTCCAAGGTGATGGTCTT 5591864 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || || | || || ||||| ||||||||| Sbjct 5591865 TCCAGTAAGGGTCTTGACGAAAATTTGCATA 5591895 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | |||||| || | || || |||||||||||||| || || Sbjct 5593036 CCACCACGGAGACGGAGAACTAAATGGAGAGTTGATTCTTTTTGAATGTTGTAGTCTGAT 5593095 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| | ||||||||||| |||| ||||||||||| || ||||| Sbjct 5593096 AAGGTGCGGCCATCTTCTAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGG 5593155 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| | || | ||| | | ||| | || |||| || ||| || Sbjct 5593156 ATACCTTCCTTGTC-TTGAATCTTAGCCTTAACATTTTCAATGGTATCGGAGGCCTCAAC 5593214 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | ||||| || || | || || || || ||||||||| Sbjct 5593215 TTCCAAGGTGATGGTCTTTCCAGTGAGGGTCTTGACAAAAATTTGCATA 5593263 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 |||||| |||| || || |||||||||||||| || ||| | |||| ||||| Sbjct 5593281 AACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCTTC 5593340 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 | |||||||| || |||| ||||||||||| || ||||| || ||||| ||||| Sbjct 5593341 TAATTGTTTACCGGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTG 5593400 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| || || | | || | ||||| | || || ||||| | ||| | ||||| Sbjct 5593401 GATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGCTTCTACCTCCAAGGTGATGGTCTT 5593460 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || || | || || ||||| ||||||||| Sbjct 5593461 TCCTGTGAGGGTCTTGACGAAAATTTGCATA 5593491 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 |||||| |||| || || |||||||||||||| || || | |||| ||||| Sbjct 5593509 AACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCTGATAAGGTGCGGCCATCTTC 5593568 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 | ||||||||||| |||| ||||||||||| || ||||| || ||||| ||||| | Sbjct 5593569 TAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTC-TT 5593627 Query 139675 GATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || | || | ||| | | ||| | || |||| || ||| || || | ||| | || | Sbjct 5593628 GAATCTTAGCCTTAACATTTTCAATGGTATCGGAGGCCTCAACTTCCAAGGTGATGGTTT 5593687 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || || | || || || || ||||||||| Sbjct 5593688 TCCCTGTGAGGGTCTTGACAAAAATTTGCATA 5593719 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 |||||| |||| || || |||||||||||||| || ||| | |||| ||||| Sbjct 5593737 AACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCTTC 5593796 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 | |||||||| || |||| ||||||||||| || ||||| || ||||| ||||| Sbjct 5593797 TAATTGTTTACCGGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTG 5593856 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| || || | | ||| | ||||||| | ||| || || | || | ||||| Sbjct 5593857 GATCTTGGCCTTGACATTTTCGATGGTGTCGGAAGCCTCAACTTCCAAAGTGATGGTCTT 5593916 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || || | || || || || ||||||||| Sbjct 5593917 TCCAGTGAGGGTCTTGACAAAAATTTGCATA 5593947 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | |||||| || | ||||| || || || ||||||||||| Sbjct 5592808 CCACCACGAAGACGGAGAACTAAATGGAGAGTAGATTCCTTCTGGATGTTATAATCAGAA 5592867 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| || ||||||||||| |||| ||||||||||| || ||||| Sbjct 5592868 AGGGTACGGCCATCTTCCAGTTGTTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGG 5592927 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || || | | || | || |||| || ||| || Sbjct 5592928 ATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACT 5592987 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | ||||| || || | || || || || ||||||||| Sbjct 5592988 TCCAAGGTGATGGTCTTTCCTGTGAGGGTCTTGACAAAAATTTGCATA 5593035 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | |||||| |||| ||||| || || || ||||| || || Sbjct 5593948 CCACCACGGAGACGGAGAACTAAATGAAGAGTAGATTCCTTCTGGATGTTGTAGTCTGAT 5594007 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| | || |||||||| |||| ||||||||||| || ||||| Sbjct 5594008 AGAGTGCGGCCATCTTCTAATTGCTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGG 5594067 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || || | | || | ||||| | || || ||| Sbjct 5594068 ATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGCTTCTACC 5594127 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||| ||||| | || || ||||| || ||||| Sbjct 5594128 TCCAAGGTGATAGTCTTTCCGGTTAGTGTCTTGACGAAGATCTGCAT 5594174 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | |||||| || | ||||| || || || ||||| ||||| Sbjct 5592352 CCACCACGGAGACGGAGAACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCAGAA 5592411 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| || ||||||||||| |||| ||||||||||| || ||||| Sbjct 5592412 AGAGTACGGCCATCTTCCAGTTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGG 5592471 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || || | | || | ||||| | | ||| || Sbjct 5592472 ATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGCCTCAACT 5592531 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | || || || || | || || ||||| ||||||||| Sbjct 5592532 TCCAAGGTGATGGTTTTTCCTGTGAGAGTCTTGACGAAAATTTGCATA 5592579 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | |||||| || | ||||| || || || ||||| ||||| Sbjct 5592580 CCACCACGGAGACGGAGAACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCAGAA 5592639 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| || ||||||||||| |||| ||||||||||| || ||||| Sbjct 5592640 AGAGTACGGCCATCTTCCAGTTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGG 5592699 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || || | | || | ||||| | | ||| || Sbjct 5592700 ATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGCCTCAACT 5592759 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | || || || || | || || ||||| ||||||||| Sbjct 5592760 TCCAAGGTAATGGTTTTTCCTGTGAGAGTCTTGACGAAAATTTGCATA 5592807 >seq115 Length=3414097 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 139575 CTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGA 139634 |||| |||||||| ||||| | ||||| | ||||| | ||||| || ||| | | Sbjct 442547 CTTTCTGAATGTTGTAATCTGATAGTGTGCGCCCATCTTCCAATTGTTTGCCTGCAAAAA 442606 Query 139635 TCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT-AGCTGT 139693 ||| | ||||| || ||||| |||||||||||||| ||| |||| |||| | | | Sbjct 442607 TCAATCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTC-TTGAATTTTGCTTTTGACATTT 442665 Query 139694 TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACG 139753 || | ||||| | | ||| || |||| || | || ||||| ||||| ||||| || Sbjct 442666 TCGATAGTGTCTGATGCCTCTACTTCAAGAGTGATTGTTTTGCCAGTCAAAGTTTTAACA 442725 Query 139754 AATATTTGCATA 139765 || || |||||| Sbjct 442726 AAAATCTGCATA 442737 >seq20 Length=9260020 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || | || || ||||||| |||||||||||||| ||||| || ||| Sbjct 134475 CCTCCTCTCAATCTCAGGACCAAGTGAAGGGTAGACTCTTTTTGGATGTTGTAGTCGGAG 134416 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| | |||||| || || |||||| ||| || || || || || Sbjct 134415 AGAGTTCTTCCATCTTCTAACTGTTTGCCGGCGAAGATCAAACGCTGTTGGTCAGGGGGA 134356 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| ||||||| || | | || | |||||| | | ||| || Sbjct 134355 ATGCCTTCCTTGTCCTGGATTTTTGCCTTCACATTCTCAATTGTGTCTGAAGCCTCAACT 134296 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | || || || || || || || || || || ||||| Sbjct 134295 TCGAGGGTGATGGTTTTCCCTGTTAAGGTCTTGACAAAAATCTGCAT 134249 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || | || || ||||||| ||||||||||| || ||||| || ||| Sbjct 134703 CCTCCTCTCAATCTCAGGACCAAGTGAAGTGTAGACTCTTTCTGGATGTTGTAGTCGGAG 134644 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| | ||| || || || |||||| ||| || || || || || Sbjct 134643 AGAGTTCTTCCATCTTCTAACTGCTTTCCGGCGAAGATCAAACGCTGTTGGTCAGGGGGA 134584 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||||||| || | | || | |||||| | | || || Sbjct 134583 ATTCCTTCCTTGTCCTGGATTTTTGCCTTAACATTCTCAATTGTGTCTGATGCTTCAACT 134524 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | ||| | || ||||| |||| ||| || || || ||||||||| || Sbjct 134523 TCCAGGGTAATTGTTTTGCCAGTCAGCGTCTTCACAAAAATTTGCATACCT 134473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495941527999200