Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq10062 105 1e-17 seq16 95.1 2e-14 >seq10062 Length=763049 Score = 105 bits (116), Expect = 1e-17 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||| ||| ||||| ||||| | | |||||||||||| || || | || || || || Sbjct 235914 ATCTCTAATGTAAGTGTCGATGAGTAAACTATACATTTCAGAGTGGACATTCTCCATTGC 235973 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 50339 || || || || |||||||| | || || || | || || ||| || |||| ||| Sbjct 235974 TATTTGGAAGCCATAGAAACAACGTGCTTCCGTTACTTGAACCTCTTGACTGAATCTTTC 236033 Query 50340 AGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 50399 | | |||||||| || || || || ||| |||||||| || | |||||| || Sbjct 236034 TACCAGGTTTTCATTAACGATACCATCCGAGGCAGCAAAAAATGCAAGTACATGCGAAAT 236093 Query 50400 AAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATC 50435 ||||||||| |||| ||| ||| ||| | |||||| Sbjct 236094 AAAATGTTTCTCGTCCGGTTTTAATTTTTCCCAATC 236129 Score = 87.8 bits (96), Expect = 3e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 49774 CCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAA 49833 |||||||| || | || || || || ||||| ||||| ||||||| | | Sbjct 234071 CCCAATTCGACAAGAAGCCTGTCAGCCACGAATTCAATATACTGCTTCATCAGAGTCCCA 234130 Query 49834 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACC 49893 |||||||| || | |||||| | |||| | |||||||| ||||||||||| || Sbjct 234131 TTCATTCCAATCATAGCAACTGGCAAAGCCTCGGTAAGAAACTCTTGTTCAATCTTCACT 234190 Query 49894 GCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAAC 49953 || || |||| || |||| | |||||||| ||| || | | ||||| ||| Sbjct 234191 GCGTCCATTATGATTTCCTTAACTCTATCTTCACTGGGTTTTTGAATGATGTGTTTGAAC 234250 Query 49954 ATCAAACATGCGAAATCGCAGTGCAGACCCT 49984 |||| || |||||||| ||||| ||||||| Sbjct 234251 ATCAGGCACGCGAAATCACAGTGGAGACCCT 234281 >seq16 Length=5839711 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 79641 TACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGT 79700 ||| |||| || ||| |||| ||| |||||||| || | ||| |||||||| ||||| Sbjct 3535912 TACTTCATCTTCAGCCGTGTATTCTATAATTTCAGTACACAAGTTGCTACACTTGATGGT 3535971 Query 79701 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGT 79760 ||||| |||||||||||| ||| ||||||| |||||||| || || || | || Sbjct 3535972 TCCTAGATTTTGTTGATTTGACTTGCTGTTACAGGCATCCTTGTAGAGCATATATGGTAC 3536031 Query 79761 ACCAGTTTCAATCTGAGATTCTATAATCGC 79790 ||| ||||| | || || || | ||| || Sbjct 3536032 ACCTGTTTCTACTTGCGAATCCAGAATGGC 3536061 Score = 93.3 bits (102), Expect = 6e-14 Identities = 156/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 79862 CGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACC 79921 ||||||| |||||||| ||| ||||||||||| |||| |||||||| | || Sbjct 3537622 CGAACTCTTCTCCCCAGCAATCTGACAATCCAGGACAGTCGTTCGGACACATGAGACTCC 3537681 Query 79922 ACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 79981 || |||||| | | |||| ||||| || ||||||||||||||| || ||| | Sbjct 3537682 ACACTCCATTCTGTTCAACTCTCTTCATGAATTCATCAGGAATCCAAAGGGCGTAAAAGA 3537741 Query 79982 GATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAA 80041 |||| | | || || || |||||||| || || || | || | || | | || Sbjct 3537742 GATCACGTGCTCGCACTTCTTCTTTTCCTGTGTTTTTCTTCAAGTCTAAAAATTCAAAAA 3537801 Query 80042 TATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCG 80087 |||| | |||||| ||||||| || || || | | |||| || || Sbjct 3537802 TATCCGCATGCCAAGGTTCCAGATAAATTGCAAAAGCTCCAGGACG 3537847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718091468411640