Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq933 95.1 9e-15 seq115 87.8 1e-12 seq20 86.0 5e-12 >seq933 Length=6104033 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||||||||| | || ||||| | ||| || ||||| | ||||| ||||| Sbjct 5593720 CCACCACGCAGTCTGAGAACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCGGAT 5593779 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || | || || |||||||| ||||| || || | || || || || | || Sbjct 5593780 AAGGTGCGGCCATCTTCTAATTGTTTACCGGCGAAGATGAGACGTTGCTGGTCTGGAGGG 5593839 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| | ||||| | | | |||||| |||||| || Sbjct 5593840 ATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCGGAAGCCTCAACT 5593899 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || ||||| || || || || |||||||||||||| Sbjct 5593900 TCCAAAGTGATGGTCTTTCCAGTGAGGGTCTTGACAAAAATTTGCAT 5593946 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||||||||| | || ||||| | ||| || ||||| | |||||||| || Sbjct 5591668 CCACCACGCAGTCTGAGAACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAATCTGAT 5591727 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || | || ||||||||||| || || || || | || || || || | || Sbjct 5591728 AAGGTGCGGCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGG 5591787 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| | ||||| | ||| || ||| ||||| || Sbjct 5591788 ATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGCCTCAACT 5591847 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || ||||| || || || || || ||||||||||| Sbjct 5591848 TCCAAGGTGATGGTCTTTCCAGTAAGGGTCTTGACGAAAATTTGCAT 5591894 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| |||| || || || |||| |||| || ||||| | ||||| ||||| Sbjct 5591439 GCCACCACGAAGTCGCAAAACTAAGTGGAGAGTGGATTCTTTTTGAATGTTGTAGTCGGA 5591498 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || || | || ||||||||||| || || || || | || || || || | || Sbjct 5591499 TAGGGTGCGGCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGG 5591558 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||| || || |||| | ||||| | | | ||||| ||| || || Sbjct 5591559 GATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAAGCTTCTAC 5591618 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| ||||| || || || || || ||||||||||| Sbjct 5591619 CTCCAAGGTGATAGTCTTTCCTGTGAGGGTCTTGACGAAAATTTGCAT 5591666 >seq115 Length=3414097 Score = 87.8 bits (96), Expect = 1e-12 Identities = 130/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 42931 TTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGT 42990 |||||||| || | ||| || | || |||||||||||||| ||||||||||||| ||| Sbjct 442558 TTGTAATCTGATAGTGTGCGCCCATCTTCCAATTGTTTGCCTGCAAAAATCAATCTCTGC 442617 Query 42991 TGATCGGCCGGCACACCTTCTTTTTCGCTGA--TCAACTCTTTGACTCTGCCAACTGTGT 43048 || || | || | |||||||| || ||| | || |||||| | | | |||| Sbjct 442618 TGGTCAGGAGGAATGCCTTCTTTGTC-TTGAATTTTGCT-TTTGACATTTTCGATAGTGT 442675 Query 43049 CGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCA 43108 | ||||| || || | || || ||||| || || | |||||| |||||||| |||| Sbjct 442676 CTGATGCCTCTACTTCAAGAGTGATTGTTTTGCCAGTCAAAGTTTTAACAAAAATCTGCA 442735 Query 43109 T 43109 | Sbjct 442736 T 442736 >seq20 Length=9260020 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || ||| | ||||| || | || ||| ||||| | ||||| ||||| Sbjct 134475 CCTCCTCTCAATCTCAGGACCAAGTGAAGGGTAGACTCTTTTTGGATGTTGTAGTCGGAG 134416 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | | || || || ||||||||||| || ||||| |||||||| || | || Sbjct 134415 AGAGTTCTTCCATCTTCTAACTGTTTGCCGGCGAAGATCAAACGCTGTTGGTCAGGGGGA 134356 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || ||| | || || | ||| |||||| |||||| || Sbjct 134355 ATGCCTTCCTTGTCCTGGATTTTTGCCTTCACATTCTCAATTGTGTCTGAAGCCTCAACT 134296 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| || |||| || || |||||||| ||||| Sbjct 134295 TCGAGGGTGATGGTTTTCCCTGTTAAGGTCTTGACAAAAATCTGCAT 134249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381277798497558