Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq10062 111 2e-19 seq16 102 1e-16 >seq10062 Length=763049 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||| ||| || || ||||| | | |||||||||||| || || | || || || || Sbjct 235914 ATCTCTAATGTAAGTGTCGATGAGTAAACTATACATTTCAGAGTGGACATTCTCCATTGC 235973 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444 || || || || |||||||| | || || || || || || ||| || |||| ||| Sbjct 235974 TATTTGGAAGCCATAGAAACAACGTGCTTCCGTTACTTGAACCTCTTGACTGAATCTTTC 236033 Query 42445 AGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 42504 | | ||||| || || || || || ||| |||||||| || | |||||| || Sbjct 236034 TACCAGGTTTTCATTAACGATACCATCCGAGGCAGCAAAAAATGCAAGTACATGCGAAAT 236093 Query 42505 AAAATATTTTTCGTCCGGTGTTAATTTATTCCAATC 42540 ||||| ||| ||||||||| ||||||| | |||||| Sbjct 236094 AAAATGTTTCTCGTCCGGTTTTAATTTTTCCCAATC 236129 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 41879 CCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAA 41938 |||||||| || | || || || | |||||| ||||| ||||||| | | Sbjct 234071 CCCAATTCGACAAGAAGCCTGTCAGCCACGAATTCAATATACTGCTTCATCAGAGTCCCA 234130 Query 41939 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 41998 |||||||| || | |||||| | |||| | |||||||| ||||||||||| || Sbjct 234131 TTCATTCCAATCATAGCAACTGGCAAAGCCTCGGTAAGAAACTCTTGTTCAATCTTCACT 234190 Query 41999 GCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAAC 42058 ||||| |||| || | ||| | |||||||| ||| | | | ||||| ||| Sbjct 234191 GCGTCCATTATGATTTCCTTAACTCTATCTTCACTGGGTTTTTGAATGATGTGTTTGAAC 234250 Query 42059 ATCAAACATGCGAAATCGCAGTGCAGACCCT 42089 |||| || |||||||| ||||| ||||||| Sbjct 234251 ATCAGGCACGCGAAATCACAGTGGAGACCCT 234281 >seq16 Length=5839711 Score = 102 bits (112), Expect = 1e-16 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 71743 TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 71802 |||| |||||||||||| || | || ||||||||||||||||||| |||||||||||| Sbjct 3535931 TATTCTATAATTTCAGTACACAAGTTGCTACACTTGATGGTTCCTAGATTTTGTTGATTT 3535990 Query 71803 CTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 71862 ||| ||||||| |||||||| || || ||| | || ||| ||||| | || || Sbjct 3535991 GACTTGCTGTTACAGGCATCCTTGTAGAGCATATATGGTACACCTGTTTCTACTTGCGAA 3536050 Query 71863 TCTATAATCGC 71873 || | ||| || Sbjct 3536051 TCCAGAATGGC 3536061 Score = 96.9 bits (106), Expect = 5e-15 Identities = 159/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 71945 CGAACTCGTCTCCCCAAGCAT-TGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003 ||||||| |||||||| || || | ||||||||||| || ||||||||||| | | Sbjct 3537622 CGAACTCTTCTCCCCAGCAATCTGAC-AATCCAGGACAGTCGTTCGGACACATGAGACTC 3537680 Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 72063 ||| |||||| | | |||| ||||| || ||||||||||||||| || ||| Sbjct 3537681 CACACTCCATTCTGTTCAACTCTCTTCATGAATTCATCAGGAATCCAAAGGGCGTAAAAG 3537740 Query 72064 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 72123 ||||| | | || || || |||||||| || || || | || | || | | | Sbjct 3537741 AGATCACGTGCTCGCACTTCTTCTTTTCCTGTGTTTTTCTTCAAGTCTAAAAATTCAAAA 3537800 Query 72124 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCG 72170 ||||| | |||||| ||||||| || || || | | |||| || || Sbjct 3537801 ATATCCGCATGCCAAGGTTCCAGATAAATTGCAAAAGCTCCAGGACG 3537847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670973504120760