Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq933 107 2e-18 seq115 105 7e-18 seq20 102 8e-17 >seq933 Length=6104033 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||||||||||| || | || ||||||||||| |||||||| ||| Sbjct 5591439 GCCACCACGAAGTCGCAAAACTAAGTGGAGAGTGGATTCTTTTTGAATGTTGTAGTCGGA 5591498 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| ||||| | |||||||||||| |||| ||||||||||| || ||||| Sbjct 5591499 TAGGGTGCGGCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGG 5591558 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| || || || | | || | ||||| | | |||||| Sbjct 5591559 GATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAAGCTTCTAC 5591618 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| || || | || || ||||| ||||||||| Sbjct 5591619 CTCCAAGGTGATAGTCTTTCCTGTGAGGGTCTTGACGAAAATTTGCATA 5591667 Score = 105 bits (116), Expect = 7e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||||||||||| || ||||||||||| |||||||| ||| | |||| ||||| Sbjct 5593281 AACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCTTC 5593340 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 | ||||||||| || |||| ||||||||||| || ||||| || ||||| ||||| Sbjct 5593341 TAATTGTTTACCGGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTG 5593400 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 || || || | | || | ||||| | || |||||| || | || | ||||| Sbjct 5593401 GATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGCTTCTACCTCCAAGGTGATGGTCTT 5593460 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || | || || ||||| ||||||||| Sbjct 5593461 TCCTGTGAGGGTCTTGACGAAAATTTGCATA 5593491 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||||||||||| |||||||| || || |||||||| || Sbjct 5593948 CCACCACGGAGACGGAGAACTAAATGAAGAGTAGATTCCTTCTGGATGTTGTAGTCTGAT 5594007 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| | ||| |||||||| |||| ||||||||||| || ||||| Sbjct 5594008 AGAGTGCGGCCATCTTCTAATTGCTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGG 5594067 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || || | | || | ||||| | || |||||| Sbjct 5594068 ATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGCTTCTACC 5594127 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| ||||| | ||| || ||||| || ||||| Sbjct 5594128 TCCAAGGTGATAGTCTTTCCGGTTAGTGTCTTGACGAAGATCTGCAT 5594174 Score = 102 bits (112), Expect = 8e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||||||||||| || ||||||||||| ||||||||||| | |||| ||||| Sbjct 5591685 AACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAATCTGATAAGGTGCGGCCATCTTC 5591744 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 | |||||||||||| |||| ||||||||||| || ||||| || ||||| ||||| Sbjct 5591745 CAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGGATACCTTCCTTGTCTTG 5591804 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 || || || | | || | || || | || || ||||| | || | ||||| Sbjct 5591805 GATCTTGGCCTTGACATTCTCAATGGTATCGGAGGCCTCAACTTCCAAGGTGATGGTCTT 5591864 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || | || || ||||| ||||||||| Sbjct 5591865 TCCAGTAAGGGTCTTGACGAAAATTTGCATA 5591895 Score = 102 bits (112), Expect = 8e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||||||||||| || ||||||||||| |||||||| ||| | |||| ||||| Sbjct 5593737 AACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCTTC 5593796 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 | ||||||||| || |||| ||||||||||| || ||||| || ||||| ||||| Sbjct 5593797 TAATTGTTTACCGGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTG 5593856 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 || || || | | ||| | ||||| | | || ||||| | ||| | ||||| Sbjct 5593857 GATCTTGGCCTTGACATTTTCGATGGTGTCGGAAGCCTCAACTTCCAAAGTGATGGTCTT 5593916 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || | || || || || ||||||||| Sbjct 5593917 TCCAGTGAGGGTCTTGACAAAAATTTGCATA 5593947 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||||||||| | || ||||||||||| |||||||| || Sbjct 5593036 CCACCACGGAGACGGAGAACTAAATGGAGAGTTGATTCTTTTTGAATGTTGTAGTCTGAT 5593095 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| | |||||||||||| |||| ||||||||||| || ||||| Sbjct 5593096 AAGGTGCGGCCATCTTCTAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGG 5593155 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| || || | | ||| | || || | || || ||| Sbjct 5593156 ATACCTTCCTTGTCTTGAATCTTAGCCTTAACATTTTCAATGGTATCGGAGGCCTCAACT 5593215 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| || || | || || || || ||||||||| Sbjct 5593216 TCCAAGGTGATGGTCTTTCCAGTGAGGGTCTTGACAAAAATTTGCATA 5593263 Score = 96.9 bits (106), Expect = 4e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||||||||||| || ||||||||||| |||||||| || | |||| ||||| Sbjct 5593509 AACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAGTCTGATAAGGTGCGGCCATCTTC 5593568 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 | |||||||||||| |||| ||||||||||| || ||||| || ||||| ||||| Sbjct 5593569 TAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTG 5593628 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 ||| || || | | ||| | || || | || || ||||| | || | || || Sbjct 5593629 AATCTTAGCCTTAACATTTTCAATGGTATCGGAGGCCTCAACTTCCAAGGTGATGGTTTT 5593688 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || | || || || || ||||||||| Sbjct 5593689 CCCTGTGAGGGTCTTGACAAAAATTTGCATA 5593719 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||||||||| | |||||||| || || ||||||||||| Sbjct 5592352 CCACCACGGAGACGGAGAACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCAGAA 5592411 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| |||||||||||||| |||| ||||||||||| || ||||| Sbjct 5592412 AGAGTACGGCCATCTTCCAGTTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGG 5592471 Query 143078 ATGCCTTCTTTGTC 143091 || ||||| ||||| Sbjct 5592472 ATACCTTCCTTGTC 5592485 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||||||||| | |||||||| || || ||||||||||| Sbjct 5592580 CCACCACGGAGACGGAGAACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCAGAA 5592639 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| |||||||||||||| |||| ||||||||||| || ||||| Sbjct 5592640 AGAGTACGGCCATCTTCCAGTTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGG 5592699 Query 143078 ATGCCTTCTTTGTC 143091 || ||||| ||||| Sbjct 5592700 ATACCTTCCTTGTC 5592713 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||||||||| | |||||||| || || ||||| ||||| Sbjct 5592808 CCACCACGAAGACGGAGAACTAAATGGAGAGTAGATTCCTTCTGGATGTTATAATCAGAA 5592867 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| |||||||||||||| |||| ||||||||||| || ||||| Sbjct 5592868 AGGGTACGGCCATCTTCCAGTTGTTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGG 5592927 Query 143078 ATGCCTTCTTTGTC 143091 || ||||| ||||| Sbjct 5592928 ATACCTTCCTTGTC 5592941 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||||||||| | |||||||| || || |||||||| || | |||| ||||| Sbjct 5592141 AACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCTTC 5592200 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 | ||| |||||||| |||| ||||||||||| || ||||| || ||||| ||||| Sbjct 5592201 TAATTGCTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGGATACCTTCCTTGTCTTG 5592260 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 || || || | | || | || || | || |||||||| | || | || || Sbjct 5592261 GATCTTGGCCTTAACATTCTCGATAGTATCAGAGGCCTCTACTTCCAAGGTGATGGTTTT 5592320 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || | || || ||||| ||||||||| Sbjct 5592321 TCCTGTGAGAGTCTTGACGAAAATTTGCATA 5592351 >seq115 Length=3414097 Score = 105 bits (116), Expect = 7e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 142995 CTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGA 143054 |||| || ||||||||||| | ||||| | ||||| | |||||| || ||| | | Sbjct 442547 CTTTCTGAATGTTGTAATCTGATAGTGTGCGCCCATCTTCCAATTGTTTGCCTGCAAAAA 442606 Query 143055 TCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTT 143114 ||| | ||||| || ||||| |||||||||||||| |||||| ||| | | || Sbjct 442607 TCAATCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCTTGAATTTTGCTTTTGACATTTT 442666 Query 143115 CCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGA 143174 | | ||||| | | |||||||||| ||| | || ||||| ||||| ||||| || | Sbjct 442667 CGATAGTGTCTGATGCCTCTACTTCAAGAGTGATTGTTTTGCCAGTCAAAGTTTTAACAA 442726 Query 143175 ATATTTGCATA 143185 | || |||||| Sbjct 442727 AAATCTGCATA 442737 >seq20 Length=9260020 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | || | ||| | || ||||||||||| |||||||| ||| | Sbjct 134931 CCTCCCCGAAGACGGAGGACAAGATGGAGGGTCGATTCTTTTTGGATGTTGTAGTCGGAC 134872 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | || || |||||| |||||| ||| || || || || || Sbjct 134871 AGAGTTCTTCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 134812 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| ||||| ||| | | ||| | ||||| | || ||| ||| Sbjct 134811 ATGCCTTCCTTGTCCTGGATTTTGGCTTTCACGTTTTCAATAGTGTCTGAGGCTTCAACT 134752 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | ||| | || ||||| || | ||||| || || || |||||| || Sbjct 134751 TCTAGAGTGATGGTTTTGCCTGTTAGGGTTTTGACAAAGATCTGCATACCT 134701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506889224482320