Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq10062 129 5e-25 >seq10062 Length=763049 Score = 129 bits (142), Expect = 5e-25 Identities = 162/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 ||| ||||| || || | ||| ||||||||||| || || | ||| ||||| |||||||| Sbjct 235920 AATGTAAGTGTCGATGAGTAAACTATACATTTCAGAGTGGACATTCTCCATTGCTATTTG 235979 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTA 13538 ||| ||||| ||||| | || || | ||| ||||| || || | ||||||||| | | Sbjct 235980 GAAGCCATAGAAACAACGTGCTTCCGTTACTTGAACCTCTTGACT-GAATCTTTCTACCA 236038 Query 13539 AGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAtt 13598 |||||| ||||| || || || ||||||||||| ||||||| ||| |||||| | Sbjct 236039 GGTTTTCATTAACGATACCATCCGAGGCAGCAAAAAATGCAAGTACATGCGAAATAAAAT 236098 Query 13599 ttttttCGTTTTCTGACAACTTTAACCAATCTGGAAAATC 13638 ||| |||| | || ||| |||||||| || ||| Sbjct 236099 GTTTCTCGTCCGGTTTTAATTTTTCCCAATCTGCAAGATC 236138 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 12799 ACTTTAAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTTGACATAACAGACAT 12858 || |||||||||| ||| | ||| || |||| | || ||||||||||| ||| | Sbjct 232489 ACATTAAAAATCAGCATCCAAAGAGAAGACATGCGCATCTTTATTTGACATGACACCACT 232548 Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 ||| |||||||| | |||| |||| || || ||||||||||| || || | || || | Sbjct 232549 TTTCTGATATTCTCCAACTTTTTTCTCGAAGAAGTTTGTTTTACCCTCCAGAGAGATCTG 232608 Query 12919 TTCCATAAAATCGAAAGGATT 12939 |||||| || || |||||||| Sbjct 232609 TTCCATGAAGTCAAAAGGATT 232629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430878655936902