Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq933 140 7e-28 seq10062 127 5e-24 >seq933 Length=6104033 Score = 140 bits (154), Expect = 7e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || |||| ||| | |||||||| ||||| || || ||||| |||||||| | || ||| Sbjct 5593963 AGAACTAAATGAAGAGTAGATTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCT 5594022 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 |||| ||| || ||||| || || || | || || || ||||| || ||||| || || Sbjct 5594023 TCTAATTGCTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCT 5594082 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || || ||||| || | ||| || | ||||||||| | || |||||| Sbjct 5594083 TGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGCTTCTACCTCCAAGGTGATAGTC 5594142 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || || ||||| || || || ||||||||||| Sbjct 5594143 TTTCCGGTTAGTGTCTTGACGAAGATCTGCATTTT 5594177 >seq10062 Length=763049 Score = 127 bits (140), Expect = 5e-24 Identities = 166/227 (73%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 268807 AGATTGGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTT 268866 ||||||| |||| |||||||| || || | | ||||| || || | ||||| ||||| Sbjct 236130 AGATTGGGAAAAATTAAAACCGGACGAGAAACATTTTATTTCGCATGTACTTGCATTTTT 236071 Query 268867 TGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACA 268926 ||| | |||||||||||||| ||||| || ||||| | ||| |||||||||| || Sbjct 236070 TGCTGCCTCGGATGGTATCGTTAATGAAAACCTGGTAGAAAGATTCAGTCAAGAGGTTCA 236011 Query 268927 GATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGA 268986 | | ||||| | ||||| || || ||||| ||||| || || ||| | || || || Sbjct 236010 AGTAACGGAAGCACGTTGTTTCTATGGCTTCCAAATAGCAATGGAGAATGTCCACTCTGA 235951 Query 268987 GATGTACAGTCTATTAATAGATACTTATA-TAGATGATAACAACGAA 269032 ||||| ||| || | || || ||||| | |||| ||| ||| ||| Sbjct 235950 AATGTATAGTTTACTCATCGACACTTACATTAGA-GATCCCAAAGAA 235905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151107027480708