Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq10458 118 6e-22 seq45 118 6e-22 seq4733 116 2e-21 seq9282 114 7e-21 seq2091 114 7e-21 seq19595 113 2e-20 seq152 113 2e-20 seq156 109 3e-19 >seq10458 Length=8204 Score = 118 bits (130), Expect = 6e-22 Identities = 82/93 (88%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 11439 TTAATA--AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||||| |||| | |||||||||||| |||||||||| ||||||||||||||||| Sbjct 6150 TTAATAGCAAAAGTTTTATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTA 6209 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||||||||||||||||||| Sbjct 6210 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 6242 >seq45 Length=8294487 Score = 118 bits (130), Expect = 6e-22 Identities = 79/89 (89%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 || |||||| | |||||||||| |||||||||| |||||||||||||||||||||| Sbjct 6023326 ATGAAAAATATTAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACG 6023267 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||| ||||||||||||||||||||| Sbjct 6023266 ACGCTCTAACCAACTGAGCTAATGGGCCG 6023238 >seq4733 Length=1692177 Score = 116 bits (128), Expect = 2e-21 Identities = 84/97 (87%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 11433 ATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492 ||||| || | |||||| | |||||||||| |||||||||| ||||||||||||| Sbjct 572603 ATAGATTTTCTTAAAAATTAG--TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTT 572546 Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||| |||||||||||||||||||| Sbjct 572545 ATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 572509 >seq9282 Length=3094 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 1526 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 1585 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 1586 CTGAGCTAATGGGCC 1600 >seq2091 Length=5430542 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 326683 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 326624 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 326623 TGAGCTAATGGGCCG 326609 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 324761 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 324820 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 324821 TGAGCTAATGGGCC 324834 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 659422 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 659481 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 659482 TGAGCTAATGGGCC 659495 >seq19595 Length=2790873 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 907080 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 907021 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 907020 TGAGCTAATGGGCC 907007 >seq152 Length=2887816 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 326152 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 326211 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 326212 TGAGCTAATGGGCC 326225 >seq156 Length=946253 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 164533 TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 164474 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 164473 TGAGCTAATGGGCC 164460 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261428255064076