Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq20 111 1e-19 seq115 107 2e-18 seq933 102 7e-17 >seq20 Length=9260020 Score = 111 bits (122), Expect = 1e-19 Identities = 169/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||||||||||||| || |||||||| | ||||| || ||||| | Sbjct 134488 AAAAATTTGCATACCTCCTCTCAATCTCAGGACCAAGTGAAGGGTAGACTCTTTTTGGAT 134429 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| || ||| | ||| | ||| || | |||||| ||| | ||||| || | || Sbjct 134428 GTTGTAGTCGGAGAGAGTTCTTCCATCTTCTAACTGTTTGCCGGCGAAGATCAAACGCTG 134369 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 || || || ||||| ||||| ||||| | ||||||||||| || | | ||||| Sbjct 134368 TTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATTTTTGCCTTCACATTCTCAATTGTGTC 134309 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | ||||||||||| || || | || || ||||| |||||||| Sbjct 134308 TGAAGCCTCAACTTCGAGGGTGATGGTTTTCCCTGTTAAGGTCTTGACAAAAATCTGCAT 134249 Query 95008 G 95008 | Sbjct 134248 G 134248 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || ||||| ||||| | ||| || ||| || ||| | ||| |||| ||| || || Sbjct 134901 GTCGATTCTTTTTGGATGTTGTAGTCGGACAGAGTTCTTCCATCTTCCAACTGCTTGCCA 134842 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| || | || || ||||| ||||| ||||| ||||| | ||||| || || Sbjct 134841 GCAAAGATCAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCTTTC 134782 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | | |||||| | | || || || | ||||||||||| || || || ||| Sbjct 134781 ACGTTTTCAATAGTGTCTGAGGCTTCAACTTCTAGAGTGATGGTTTTGCCTGTTAGGGTT 134722 Query 94991 TTCACAAAGATCTGCAT 95007 || |||||||||||||| Sbjct 134721 TTGACAAAGATCTGCAT 134705 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||||||||| || |||||||| | ||||| || || || | ||| || ||| Sbjct 134703 CCTCCTCTCAATCTCAGGACCAAGTGAAGTGTAGACTCTTTCTGGATGTTGTAGTCGGAG 134644 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| || | ||| |||||| | ||||| || | || || || || ||| Sbjct 134643 AGAGTTCTTCCATCTTCTAACTGCTTTCCGGCGAAGATCAAACGCTGTTGGTCAGGGGGA 134584 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | ||||||||||| || | | ||||| | || || Sbjct 134583 ATTCCTTCCTTGTCCTGGATTTTTGCCTTAACATTCTCAATTGTGTCTGATGCTTCAACT 134524 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || || ||||| ||||| || || |||||||| || ||||| Sbjct 134523 TCCAGGGTAATTGTTTTGCCAGTCAGCGTCTTCACAAAAATTTGCAT 134477 >seq115 Length=3414097 Score = 107 bits (118), Expect = 2e-18 Identities = 147/202 (73%), Gaps = 5/202 (2%) Strand=Plus/Plus Query 94818 CCTTT-TGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAA 94874 ||||| || | ||| ||||| | ||||||| | ||| |||| ||||| || ||| Sbjct 442546 CCTTTCTGAATGTTGTAATC--TGATAGTGTGCGCCCATCTTCCAATTGTTTGCCTGCAA 442603 Query 94875 AGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGG 94934 | || ||||| ||||| || |||||||| ||||||||||| | |||||| ||||| Sbjct 442604 AAATCAATCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCTTGAATTTTGCTTTTGACAT 442663 Query 94935 CGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCA 94994 ||| |||||| | || || |||| ||||| ||||| ||||| | |||||| | Sbjct 442664 TTTCGATAGTGTCTGATGCCTCTACTTCAAGAGTGATTGTTTTGCCAGTCAAAGTTTTAA 442723 Query 94995 CAAAGATCTGCATGCTTACAAC 95016 |||| |||||||| || || || Sbjct 442724 CAAAAATCTGCATACTGACTAC 442745 >seq933 Length=6104033 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 || || || | |||||||||||| || | ||| ||||| | ||| | ||| ||| Sbjct 5592370 ACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCAGAAAGAGTACGGCCATCTTCC 5592429 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || ||||| || | ||||| | | |||||| |||||||| |||||||| ||||| | Sbjct 5592430 AGTTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGG 5592489 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||| || ||| ||||||| || || || | |||||||||||| Sbjct 5592490 ATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGCCTCAACTTCCAAGGTGATGGTTTTT 5592549 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| || || || || ||||| Sbjct 5592550 CCTGTGAGAGTCTTGACGAAAATTTGCAT 5592578 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 || || || | |||||||||||| || | ||| ||||| | ||| | ||| ||| Sbjct 5592598 ACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAATCAGAAAGAGTACGGCCATCTTCC 5592657 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || ||||| || | ||||| | | |||||| |||||||| |||||||| ||||| | Sbjct 5592658 AGTTGTTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGG 5592717 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||| || ||| ||||||| || || || | || ||||||||| Sbjct 5592718 ATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGCCTCAACTTCCAAGGTAATGGTTTTT 5592777 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| || || || || ||||| Sbjct 5592778 CCTGTGAGAGTCTTGACGAAAATTTGCAT 5592806 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 || || || | |||||||||||| || | ||||||||| | || | ||| ||| Sbjct 5592826 ACTAAATGGAGAGTAGATTCCTTCTGGATGTTATAATCAGAAAGGGTACGGCCATCTTCC 5592885 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || ||||| || | ||||| | | |||||| || ||||| |||||||| ||||| | Sbjct 5592886 AGTTGTTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGGATACCTTCCTTGTCTTGG 5592945 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || |||||||| ||| || || | | ||||| || | |||||||| ||| Sbjct 5592946 ATCTTGGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCCAAGGTGATGGTCTTT 5593005 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || ||||| || ||||| Sbjct 5593006 CCTGTGAGGGTCTTGACAAAAATTTGCAT 5593034 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 || || || | |||||||||||| || | ||| || || | |||| | ||| || Sbjct 5593966 ACTAAATGAAGAGTAGATTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCTTCT 5594025 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | || || || | ||||| | | |||||| |||||||| |||||||| ||||| | Sbjct 5594026 AATTGCTTACCAGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGG 5594085 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || |||||||| ||| ||||||| | || || || | ||||| || ||| Sbjct 5594086 ATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGCTTCTACCTCCAAGGTGATAGTCTTT 5594145 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || ||||||||||| Sbjct 5594146 CCGGTTAGTGTCTTGACGAAGATCTGCAT 5594174 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 || || || | |||||||||||| || | ||| || || | |||| | ||| || Sbjct 5592142 ACTAAATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCTTCT 5592201 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | || || || | ||||| | | |||||| || ||||| |||||||| ||||| | Sbjct 5592202 AATTGCTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGGATACCTTCCTTGTCTTGG 5592261 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||| || ||| ||| |||| | || || || | |||||||||||| Sbjct 5592262 ATCTTGGCCTTAACATTCTCGATAGTATCAGAGGCCTCTACTTCCAAGGTGATGGTTTTT 5592321 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| || || || || ||||| Sbjct 5592322 CCTGTGAGAGTCTTGACGAAAATTTGCAT 5592350 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATA--GTGTTGGAATCCT 94856 || || || | ||| ||||| ||||| | ||| ||||| | ||| ||| | ||| | Sbjct 5591686 ACTAAATGAAGAGTTGATTCTTTTTGAATGTTGTAATC--TGATAAGGTGCGGCCATCTT 5591743 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||| ||||| || | ||||| | | |||||| || ||||| |||||||| ||||| | Sbjct 5591744 CCAATTGTTTACCAGCGAAGATGAGACGTTGCTGGTCCGGAGGGATACCTTCCTTGTCTT 5591803 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || || |||||||| | | || || | | || || || | |||||||| | Sbjct 5591804 GGATCTTGGCCTTGACATTCTCAATGGTATCGGAGGCCTCAACTTCCAAGGTGATGGTCT 5591863 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||||| || || || || || ||||| Sbjct 5591864 TTCCAGTAAGGGTCTTGACGAAAATTTGCAT 5591894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448180522506360