Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bemisia_20tabaci_20[refseq_20GCF_5F001854935.1_202016-10-26] 19,751 sequences; 615,017,152 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq19449 226 4e-55 seq10707 224 2e-54 seq6966 224 2e-54 seq17605 217 2e-52 seq17023 111 2e-20 seq93 89.7 8e-14 >seq19449 Length=1995764 Score = 226 bits (250), Expect = 4e-55 Identities = 211/268 (79%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | | ||||| ||||||||||| || || |||||||| || ||| Sbjct 1030342 GCCAAGCGTCACCGAAAAGTGCTTCGCGATAACATCCAGGGTATTACCAAGCCCGCCATC 1030401 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||||||||| ||||||||||||||| |||||||| | |||| ||||| | Sbjct 1030402 CGTCGTCTGGCTCGTCGAGGTGGAGTCAAGCGTATCTCTGGACTCATCTACGAAGAAACC 1030461 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| | ||||| | | ||| |||| |||||| || ||| |||||| Sbjct 1030462 CGTGGTGTCCTCAAGGTTTTCCTGGAAAACGTCATCCGTGATGCCGTCACCTACACCGAG 1030521 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | |||||||||||| ||||||| ||||||| || ||||||||||| ||| Sbjct 1030522 CACGCCAAGAGGAAGACTGTCACCGCCATGGACGTCGTCTACGCCTTGAAACGTCAGGGC 1030581 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 || | | || ||||| ||| |||||| Sbjct 1030582 CGCACCCTCTACGGTTTCGGAGGTTAAT 1030609 >seq10707 Length=17539 Score = 224 bits (248), Expect = 2e-54 Identities = 210/267 (79%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | || || ||||||||||| ||||| |||||||| || ||| Sbjct 5285 GCCAAGCGTCACCGTAAGGTGCTCCGCGATAACATCCAGGGAATAACCAAGCCCGCCATC 5226 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| || || ||||||||||||||| |||||||| | |||| ||||| | Sbjct 5225 CGTCGTCTGGCCCGCCGAGGTGGAGTCAAGCGTATCTCTGGACTCATCTACGAAGAAACC 5166 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||||| ||||||| ||| |||||||| |||||| || ||| |||||| Sbjct 5165 CGCGGAGTTCTGAAGGTCTTCCTTGAGAACGTTATCCGTGATGCCGTCACCTACACCGAG 5106 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | |||||||||||| | |||||| ||||||| || ||||| |||||||| Sbjct 5105 CACGCCAAGAGGAAGACTGTCACCGCTATGGATGTCGTCTACGCCTTGAAGCGTCAAGGA 5046 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || ||||| ||| ||||| Sbjct 5045 CGTACCCTCTACGGTTTCGGAGGTTAA 5019 >seq6966 Length=16435 Score = 224 bits (248), Expect = 2e-54 Identities = 210/267 (79%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | || || ||||||||||| ||||| |||||||| || ||| Sbjct 10121 GCCAAGCGTCACCGTAAGGTGCTCCGCGATAACATCCAGGGAATAACCAAGCCCGCCATC 10062 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| || || ||||||||||||||| |||||||| | |||| ||||| | Sbjct 10061 CGTCGTCTGGCCCGCCGAGGTGGAGTCAAGCGTATCTCTGGACTCATCTACGAAGAAACC 10002 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||||| ||||||| ||| |||||||| |||||| || ||| |||||| Sbjct 10001 CGCGGAGTTCTGAAGGTCTTCCTTGAGAACGTTATCCGTGATGCCGTCACCTACACCGAG 9942 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | |||||||||||| | |||||| ||||||| || ||||| |||||||| Sbjct 9941 CACGCCAAGAGGAAGACTGTCACCGCTATGGATGTCGTCTACGCCTTGAAGCGTCAAGGA 9882 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || ||||| ||| ||||| Sbjct 9881 CGTACCCTCTACGGTTTCGGAGGTTAA 9855 >seq17605 Length=1193 Score = 217 bits (240), Expect = 2e-52 Identities = 209/268 (78%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||||||||| |||| | || || ||||||||||| ||||| |||||||| || ||| Sbjct 827 GCTAAGCGTCACCGCAAAGTGCTCCGCGATAACATCCAGGGAATTACCAAGCCCGCCATC 768 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| || || ||||||||||||||| |||||||| | |||| ||||| | Sbjct 767 CGTCGTCTGGCCCGCCGAGGTGGAGTCAAGCGTATCTCTGGACTCATCTACGAAGAAACC 708 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| | ||||| ||| ||| |||| |||||| || ||| |||||| Sbjct 707 CGTGGTGTCCTCAAGGTTTTCCTTGAGAACGTCATCCGTGATGCCGTCACCTACACCGAG 648 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||||||||| ||||||| |||| || || |||||||||| ||| Sbjct 647 CACGCCAAGAGGAAGACTGTCACAGCCATGGACGTCGTTTACGCCCTGAAACGTCAGGGC 588 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 || | | || ||||| ||| |||||| Sbjct 587 CGCACCCTCTACGGTTTCGGAGGTTAAT 560 >seq17023 Length=6626868 Score = 111 bits (122), Expect = 2e-20 Identities = 94/116 (81%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | | ||||| ||||||||||| || ||||||| ||| ||||| Sbjct 1376700 GCCAAGCGTCACCGAAAAGTGCTTCGCGATAACATCCAGGGTATCACCAGGCCCGCTATT 1376759 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGA 16548 |||||||||||||| || ||||||||||||| | |||||||| | ||| ||||| Sbjct 1376760 CGTCGTCTGGCTCGCCGAGGTGGAGTCAAGCATATCTCTGGACTCATCTTCGAAGA 1376815 >seq93 Length=2621097 Score = 89.7 bits (98), Expect = 8e-14 Identities = 174/257 (68%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||| || ||| |||||||| | || ||||| || |||| || || | |||| Sbjct 77720 CGTGATAAAATTTTAGGTGTCACCAAGTCTGCCATCCGCCGATTGGCCCGCCGAGCTGGA 77779 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||| || ||||| | | || |||| ||| | || ||| || | ||||| |||||| Sbjct 77780 GTCAAACGAGTCTCCGAACTGATCTACAGAGAAACCCGCGATATTATCAAGATTTTCCTC 77839 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | | | ||||||||||| || ||| || ||||| |||| | || ||||| | Sbjct 77840 ACAAATATCATCCATGATGCCATCACCTACACAGAGCATGCTAGGAGAAAAACTGTTATG 77899 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 ||| || | ||||| ||| ||||| || || | | | ||||||| || Sbjct 77900 GTAGCAGATGTCATTTATGCTCTGAGGCGTCAGGGACGCACCGTCAGCGATTTTGGAGGT 77959 Query 16697 TAATCTTCTAATCAAAC 16713 ||| |||||| || ||| Sbjct 77960 TAAACTTCTATTCTAAC 77976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79057141522443